Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24280 479 / 7e-166 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 452 / 4e-155 Serine carboxypeptidase S28 family protein (.1) AT5G22860 322 / 3e-104 Serine carboxypeptidase S28 family protein (.1.2) AT3G28680 96 / 1e-22 Serine carboxypeptidase S28 family protein (.1) AT2G18080 91 / 2e-19 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT4G36190 91 / 3e-19 Serine carboxypeptidase S28 family protein (.1) AT4G36195 87 / 6e-18 Serine carboxypeptidase S28 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017002 [exp] 744 / 0 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10011603 [exp] 431 / 8e-147 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10005354 [exp] 353 / 4e-116 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 350 / 5e-115 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10008358 [exp] 331 / 1e-107 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 325 / 9e-106 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10039645 [exp] 195 / 3e-57 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10028365 [exp] 88 / 4e-18 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 64 / 6e-11 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207900 [exp] 631 / 0 AT2G24280 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G111000 [exp] 485 / 3e-168 AT2G24280 728 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G008100 [exp] 454 / 1e-155 AT5G65760 783 / 0.0 Serine carboxypeptidase S28 family protein (.1) Potri.009G002300 [exp] 377 / 3e-126 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 377 / 8e-126 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 371 / 2e-123 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.010G232300 [exp] 369 / 2e-122 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 368 / 2e-122 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002200 [exp] 367 / 4e-122 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 356 / 1e-117 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05577 [flax] [poplar] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Lus10021325 pacid=23178248 polypeptide=Lus10021325 locus=Lus10021325.g ID=Lus10021325.BGIv1.0 annot-version=v1.0 ATGGCGATCAAACCTTCCAAATCCCCTCATTTCACCTTCATCTTCCTCTTCCACTTCCTCTTCACTCAATCTCAAGCAACAACAACTCCCAGATTCCCAG CCTCAGTCTTCCACTCTCATAACAACCAACATTCCTCTGTTTCCGCATCCCTCAGTCGCCACGATCAACCGGCAGCCCATCATCAGCTCTACAGAGAAGA ATTCTTCACTCAAATCCTCGACCACTTCTCTTACACCCCGCAAAGCTATCAAACTTTCCAGCAACGGTACCTTGTCAACGACACGTACTGGGGCGGCGCC CGAAAGAATGCCCCCATTTTCGTTTACACCGGTAACGAAGGCGGCATCGAGTGGTTCGCCCGCAACACCGGCTTCATGTTCGACATCGCCCCCAAATTCA ATGCCCGCCTCGTCTTCATCGAGTCGATTCCGTTCGGAGGAGATAAACACAAGGCTTACAAGGACGCTAGAACACTGGGATACCTTAGCAGCACACAAGC ATTAGCAGATTTCGCCATGCTAATAGTCGACCTCAAGAAGAACCTCTCCGCTACAGAGTCCCCTGTTGTGGTCTTCGGCGGCTCCTATGGCGGAATGCTG GCGGCATGGTTTAGGCTTAAGTATCCACATATAGCAATTGGAGCTTTAGCGTCTTCTGCACCAATCCTCGATTTCGACGATCTAACCTCTCCGTACAGCT TCAACTCCATTGTCACTCGAGACTTCAGGAGTGAGAGCGAGAGCTGCTACAGAACAATCAAAGAATCATGGGATCTGATCGCTCAAACTACAACCCAACC CGGAGGACTCGGCAAGCTACAGAGGTCGTTTCACCTATGCAAGAAGGAGGATGCGCTGTACCTGTCAGTGTGGCTACGTACGGCGTGGGTGTACACAGCG ATGACTGATTATCCAACTGCCTCGAATTTTCTGGCACCATTCCCGGCTTATCCGGTGAGAGAGATGTGCCGAGCAATTGACAATCCAAAGACCGGAAACG ACTCATTCGCCAAGCTTTATGCCGCAGCTAGCGTCTACTATAACTACACCGGATCCGCCGGCTCCGGCTGTTTCAATTTCGCCGACGATTCCAATTCTGA CGACCTCGGATCTGACGGATGGAATTGGCAGGCTTGTACAGAGATGGTGATGCCACAAGGAGGAAGCGACGAGGAAAGTATATTCCCAGCTTGGAGATGG AGCTACGATGATAACTCCTCCTGCGACAAGGATTACGACATTCTCCCTCGCAGAAACTGGATCACCACCGAGTTCGGCGGACATAGGATTAAGGAAGTGC TGAAGAGGTATGGCAGCAACATCATCTTCTTCAATGGCTTGAGAGACCCTTGGAGTGGAGGAGGGGTGTTGGAGAGTATCTCTAGCAGCATAGTTGCAAT CGTTGCAGAAAAAGGTGCTCACCACGTGGATCTGAGATTTGCGACGAGCCAGGACCCGGAATGGCTTCGGCAAGTGAGGAATGTTGAGATCAAAATTATT GGCAAGTGGTTGGCTCAGTATCATAGTGATATGGGCCGTTCACGCCCCAATAAGCTTAAGAAGCCCATAGTCCATATCTACTAG
AA sequence Show only first row Show all	>Lus10021325 pacid=23178248 polypeptide=Lus10021325 locus=Lus10021325.g ID=Lus10021325.BGIv1.0 annot-version=v1.0 MAIKPSKSPHFTFIFLFHFLFTQSQATTTPRFPASVFHSHNNQHSSVSASLSRHDQPAAHHQLYREEFFTQILDHFSYTPQSYQTFQQRYLVNDTYWGGA RKNAPIFVYTGNEGGIEWFARNTGFMFDIAPKFNARLVFIESIPFGGDKHKAYKDARTLGYLSSTQALADFAMLIVDLKKNLSATESPVVVFGGSYGGML AAWFRLKYPHIAIGALASSAPILDFDDLTSPYSFNSIVTRDFRSESESCYRTIKESWDLIAQTTTQPGGLGKLQRSFHLCKKEDALYLSVWLRTAWVYTA MTDYPTASNFLAPFPAYPVREMCRAIDNPKTGNDSFAKLYAAASVYYNYTGSAGSGCFNFADDSNSDDLGSDGWNWQACTEMVMPQGGSDEESIFPAWRW SYDDNSSCDKDYDILPRRNWITTEFGGHRIKEVLKRYGSNIIFFNGLRDPWSGGGVLESISSSIVAIVAEKGAHHVDLRFATSQDPEWLRQVRNVEIKII GKWLAQYHSDMGRSRPNKLKKPIVHIY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10021325 [exp]	0	1
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10034208 [exp]	10.5	0.8298
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10036228 [exp]	28.1	0.8226
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	38.7	0.7866
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016318 [exp]	43.1	0.7906
					Lus10024932 [exp]	57.8	0.7930
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	73.9	0.7547

Compare expression of checked genes

Lus10021325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.