Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06250 190 / 5e-59 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT2G36080 184 / 4e-58 B3 ABS2, NGAL1 AP2/B3-like transcriptional factor family protein (.1.2) AT3G11580 184 / 3e-57 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT2G46870 161 / 3e-47 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT3G61970 160 / 3e-47 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1) AT1G13260 160 / 1e-46 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G01030 155 / 8e-45 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT1G68840 154 / 3e-44 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT3G25730 149 / 2e-42 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G25560 149 / 3e-42 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004226 [exp] 162 / 5e-47 AT5G06250 183 / 4e-55 AP2/B3-like transcriptional factor family protein (.1.2) Lus10041487 [exp] 153 / 1e-43 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10034276 [exp] 142 / 3e-41 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10021707 [exp] 134 / 9e-37 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10026212 [exp] 106 / 1e-27 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10036282 [exp] 92 / 4e-21 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10029431 [exp] 74 / 2e-16 AT2G36080 69 / 3e-16 AP2/B3-like transcriptional factor family protein (.1.2) Lus10025226 [exp] 77 / 2e-15 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10018440 [exp] 74 / 3e-14 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208100 [exp] 221 / 8e-70 AT2G36080 228 / 3e-73 AP2/B3-like transcriptional factor family protein (.1.2) Potri.016G074500 [exp] 210 / 2e-65 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2) Potri.002G181600 [exp] 162 / 7e-47 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.011G149700 [exp] 162 / 2e-46 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.014G107200 [exp] 161 / 2e-46 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.001G452200 [exp] 161 / 4e-46 AT2G46870 198 / 4e-60 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.010G129200 [exp] 157 / 5e-45 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.008G117100 [exp] 155 / 1e-44 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.018G109201 [exp] 116 / 5e-30 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 112 / 1e-28 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10021326 pacid=23178205 polypeptide=Lus10021326 locus=Lus10021326.g ID=Lus10021326.BGIv1.0 annot-version=v1.0 ATGTCCATTAACCAATTCTACCCAACAGACCAACATCACCATCATCATCAACAACAACAACTTCTCTGGTGGCAACAGCACCACCACCAAATGGACCATC ATCCATCTCCCCCGCTGCCGCCGTGGATCTCCGCCGCCTCCCCTTCCACCGCCCTCAATTTCAACCTCAACCACGAACACTCATCCACTGCCGAATTCGA TGATTTATCGCCGTCATCGAAGCAGGCTATGTTCGAGAAGCCGTTGACGCCGTCCGACGTCGGCAAGCTGAACAGGCTGGTAATCCCGAAGCAGCACGCT GAGAGGTACTTTCCGCTCGGAGCCGACTCGGTGGATAAGGGGCTTTTGCTGAGTTTCGAGGACGAGTCAGGGAAATGCTGGAGGTTCCGTTACTCTTACT GGAACAGCAGTCAGAGCTACGTGTTGACTAAAGGGTGGAGCCGTTACGTTAAGGAGAAGCAGCTCGAGTCCGGCGACATCGTTTTGTTCCAGCGCCACCG TAGCGACGGCGATCGCCTTTTCATCGGCTGGAAAAGAGGGGCTCAGAATAATAATAATGGGAGCAAAAATATTAGCCCCGATCGTCAACGACATTATAAT CAGGGCGGCGGTGGTGGTGCTGGAAGAGGGGTGGTTTATACTTCGTCGCCGGTGAAGCCTTATCTGGAGCACGGCGGCGTTAGTGGGAGGACGATGACGA TGATGGGTAATATTAATAATGTGCCGTACCAATCTGATGACCCTCGTCATGCAGCAACAGGAGGCGGAGGAGAGCAGCAGAAAATTTCAGGAGGGGGGAA TTCGAAGAGGTTGAGGTTGTTCGGTGTGAACATGGAGTGGCAACCGGAAAACGAGGAGCCGCCGCCGGAGTCTTCGTCACTCTTTCCCTACACGACGCTC TTCCGATCTATAATTATATAA
AA sequence Show only first row Show all	>Lus10021326 pacid=23178205 polypeptide=Lus10021326 locus=Lus10021326.g ID=Lus10021326.BGIv1.0 annot-version=v1.0 MSINQFYPTDQHHHHHQQQQLLWWQQHHHQMDHHPSPPLPPWISAASPSTALNFNLNHEHSSTAEFDDLSPSSKQAMFEKPLTPSDVGKLNRLVIPKQHA ERYFPLGADSVDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLESGDIVLFQRHRSDGDRLFIGWKRGAQNNNNGSKNISPDRQRHYN QGGGGGAGRGVVYTSSPVKPYLEHGGVSGRTMTMMGNINNVPYQSDDPRHAATGGGGEQQKISGGGNSKRLRLFGVNMEWQPENEEPPPESSSLFPYTTL FRSIII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	0	1
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	2.0	0.9709
AT2G01900			DNAse I-like superfamily prote...		Lus10031310 [exp]	2.0	0.9608
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	4.2	0.9587
					Lus10020157 [exp]	5.5	0.9387
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	6.0	0.9560
AT3G21945			Receptor-like protein kinase-r...		Lus10028980 [exp]	6.0	0.9244
AT1G31690			Copper amine oxidase family pr...		Lus10013356 [exp]	8.0	0.9500
AT4G30170			Peroxidase family protein (.1)		Lus10001442 [exp]	8.5	0.9499
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	8.5	0.9533
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10038070 [exp]	8.6	0.9244

Compare expression of checked genes

Lus10021326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.