Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06240 184 / 2e-60 EMB2735 embryo defective 2735 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017003 [exp] 283 / 2e-99 AT5G06240 207 / 2e-69 embryo defective 2735 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074700 [exp] 216 / 7e-73 AT5G06240 215 / 2e-72 embryo defective 2735 (.1) Potri.006G208200 [exp] 60 / 2e-12 AT5G06240 67 / 2e-15 embryo defective 2735 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021327 pacid=23178241 polypeptide=Lus10021327 locus=Lus10021327.g ID=Lus10021327.BGIv1.0 annot-version=v1.0 ATGAAGACGAAGGTGGTGATCCGTAAGCTGTACGATTACGTCCGCTACGACTTAAAAGAAATTGCTTTCCCGTCGTCTCTCCCCAACCCTCCTCACATTA AACCACGTCCCAAATTGACCTTCTACGATCGGTTCCTTATTCTGAAGAAGGCCACTAGACTTTATTGTGCGAGCTGGGTGAGGGATATAGGTCCCGACCT TCGCCCAAATGATTACAAGAAGCGAAAAGAGAGCGAAGATAACCCAGATGGAACAAATTCTGGAGTGAAGGAGCCATCAGTGCTTGAAGATCTTGCGGTG GCTGCAAGAGGAGGTGCTGAGACCTTGAAACCAGCCTTGCAGAGGTTGTACATGACCAGAGCTTCTGCGTACCGAGATGCTCTGAAAAGTTTCATAGAAG GGTATCAGGAAGGTGTCCAGCAGGTTGTGGAGAAGAAGCAAGAATCTGAAACTAGACATGAGGGAGACACTACTAAGAAATCAATATGA
AA sequence Show only first row Show all	>Lus10021327 pacid=23178241 polypeptide=Lus10021327 locus=Lus10021327.g ID=Lus10021327.BGIv1.0 annot-version=v1.0 MKTKVVIRKLYDYVRYDLKEIAFPSSLPNPPHIKPRPKLTFYDRFLILKKATRLYCASWVRDIGPDLRPNDYKKRKESEDNPDGTNSGVKEPSVLEDLAV AARGGAETLKPALQRLYMTRASAYRDALKSFIEGYQEGVQQVVEKKQESETRHEGDTTKKSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10021327 [exp]	0	1
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	2.0	0.8210
AT4G04614			unknown protein		Lus10006902 [exp]	4.9	0.8096
AT4G00530			unknown protein		Lus10037854 [exp]	7.1	0.8103
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	7.9	0.8097
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Lus10003864 [exp]	11.5	0.7651
AT2G44020			Mitochondrial transcription te...		Lus10004534 [exp]	14.7	0.7797
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	15.3	0.8070
AT5G18475			Pentatricopeptide repeat (PPR)...		Lus10041927 [exp]	20.1	0.7549
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	22.8	0.7990
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10006515 [exp]	23.0	0.7809

Compare expression of checked genes

Lus10021327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.