Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11570 499 / 1e-176 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 481 / 1e-169 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G06080 344 / 3e-115 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 335 / 1e-111 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G62390 298 / 3e-97 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G20590 293 / 4e-95 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT1G60790 288 / 3e-92 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06700 285 / 1e-90 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 282 / 3e-90 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G48880 271 / 6e-87 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017004 [exp] 692 / 0 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10004225 [exp] 590 / 0 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10000250 [exp] 590 / 0 AT3G11570 428 / 7e-150 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10029430 [exp] 512 / 0 AT3G11570 443 / 2e-155 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10034041 [exp] 337 / 3e-112 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 326 / 3e-108 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 323 / 4e-107 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10003734 [exp] 317 / 1e-104 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028025 [exp] 311 / 4e-102 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074800 [exp] 526 / 0 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.008G203900 [exp] 351 / 4e-118 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.002G054400 [exp] 327 / 2e-108 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.006G208251 [exp] 320 / 1e-107 AT3G11570 280 / 1e-91 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.018G133000 [exp] 295 / 1e-95 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.008G108500 [exp] 293 / 3e-95 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.010G043300 [exp] 295 / 4e-95 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.T171301 [exp] 293 / 4e-95 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.006G071500 [exp] 293 / 5e-95 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 291 / 3e-93 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10021328 pacid=23178158 polypeptide=Lus10021328 locus=Lus10021328.g ID=Lus10021328.BGIv1.0 annot-version=v1.0 ATGATGATTCGACCCGAGCTTGTATTAATCTTGTTCCTCCTCATCGTCATCGTTTCATCCCTCTACGCCTTCGATCTCCTCTCTCCCATCGATCCCATCT CATACTTTCGGGTCGGGTTCCTGCCGGAGAGAAGGAATTGCCGTGACCGGCCGCAATACAGCGAAGGCGAGTGGGTGCGGAAAGAAAAGGTCGCATCATC ATCATCATGGTATGGGGAAAGCTGCCCGTTTCTTGATCCTGGGTTCCGGTGCCGATGTAACGGCAGGGGCGACGTGGAATACCTCGAGTGGCGGTGGCAG CCACGTGAATGTGATTTGCCCAGATTCAACGCGGGGGACTTGCTCGAAAGGGCGAGGAATGGCAGGATAGTGTTTGCCGGAGACTCGATCGGAAGGAACC AGTGGGAGTCGTTCCTGTGCATGCTAGCACAAGGAGTATCCAATGTCTCCACAATCTATGAAGTGAATGGAAACCCAATCACGAAGCACAGAGGGTTCCT CATCATGCGCTTCAGCGACTACAACCTCACAGTCGAATACTACAGGTTACCTTTCCTGGTATCCCTCGGCCGACCACCCAAGGATTCCCCGCCTGAAGTC AAGATGGGAATCCAGATCGACCAGTTGCACTGGTTCTCGAAAAGTTGGGTTGGGGCTGACGTTCTGGTGTTCAACACAGGACACTGGTGGAAGGAGTACA AAACTATCTACACGGGTTACTATTTCGAGGAAGGCGGTGAACTAAACACATCGATGGGAGTAATGGAAGCATTCGAGAAATTGCTGCTAACGTGGAAGAA ATGGGTGACACAGAATTTGGATGGTGAAAGGAGTCATGTTTTCTTTCGCAGTTATTCTCCTGCACATTACAGGAACGGGACATGGAATGAAGGAGGGCAT TGCGATCTGGACCTCCGACCAGTGACGAATCCGGAACTTCTAGAACCTGAGCCGAGAACCAACCGACCCATCTCTGAGGTGATTACAGAGATGAGAAGGA TGAACAAGAAAGTTGAGTACTTGAACATTACACATCTGACAGAGTACAGATTCGACGGCCACCCGTCACGGTACCGGGAACCAGGAACTCCGCAGGAAGC TCCACAAGACTGCAGTCACTGGTGCCTTCCAGGAGTCCCAGATGTGTGGAATGAGATATTGTATGCTCACTTGGTGTCAATGGGATTCAGAACTAAATGA
AA sequence Show only first row Show all	>Lus10021328 pacid=23178158 polypeptide=Lus10021328 locus=Lus10021328.g ID=Lus10021328.BGIv1.0 annot-version=v1.0 MMIRPELVLILFLLIVIVSSLYAFDLLSPIDPISYFRVGFLPERRNCRDRPQYSEGEWVRKEKVASSSSWYGESCPFLDPGFRCRCNGRGDVEYLEWRWQ PRECDLPRFNAGDLLERARNGRIVFAGDSIGRNQWESFLCMLAQGVSNVSTIYEVNGNPITKHRGFLIMRFSDYNLTVEYYRLPFLVSLGRPPKDSPPEV KMGIQIDQLHWFSKSWVGADVLVFNTGHWWKEYKTIYTGYYFEEGGELNTSMGVMEAFEKLLLTWKKWVTQNLDGERSHVFFRSYSPAHYRNGTWNEGGH CDLDLRPVTNPELLEPEPRTNRPISEVITEMRRMNKKVEYLNITHLTEYRFDGHPSRYREPGTPQEAPQDCSHWCLPGVPDVWNEILYAHLVSMGFRTK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	0	1
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	1.0	0.9171
AT1G09157			Protein of unknown function (D...		Lus10030466 [exp]	2.8	0.8361
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	4.9	0.7697
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	5.7	0.8128
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	6.0	0.7813
AT3G02100			UDP-Glycosyltransferase superf...		Lus10021163 [exp]	8.0	0.7827
AT5G59700			Protein kinase superfamily pro...		Lus10020474 [exp]	8.4	0.7848
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	8.9	0.7512
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	11.4	0.7681
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	11.7	0.7885

Compare expression of checked genes

Lus10021328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.