Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11560 941 / 0 LETM1-like protein (.1.2.3.4) AT5G06220 850 / 0 LETM1-like protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017005 [exp] 1659 / 0 AT3G11560 975 / 0.0 LETM1-like protein (.1.2.3.4) Lus10038268 [exp] 147 / 2e-36 AT3G11560 147 / 4e-37 LETM1-like protein (.1.2.3.4) Lus10029426 [exp] 142 / 2e-35 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10025835 [exp] 140 / 6e-34 AT1G52155 353 / 2e-114 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208300 [exp] 1121 / 0 AT3G11560 1056 / 0.0 LETM1-like protein (.1.2.3.4) Potri.016G074900 [exp] 1101 / 0 AT3G11560 1033 / 0.0 LETM1-like protein (.1.2.3.4) Potri.001G187100 [exp] 143 / 4e-35 AT5G06220 145 / 1e-35 LETM1-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07766 [flax] [poplar] LETM1 LETM1-like protein
Representative CDS sequence Show only first row Show all	>Lus10021329 pacid=23178208 polypeptide=Lus10021329 locus=Lus10021329.g ID=Lus10021329.BGIv1.0 annot-version=v1.0 ATGGGCACTCCTACAGAAGGTTTAGCATGGCAGAACAGAAGGCCCTCGTCCAGTCCTTGCCTTTCTGGCAATTCAGTTCAAACCGAAGCTCTCCTCAAGA GAACGGTCCAGTTTGGTTACCTGATGCATTGCAGCAGGGCGAGGGGTAGAAGCCTTGTGAGACTTGTTTTATTGGGAAATGGTAGTTGTAGCTACCCATT TGCCGGTTTTAGGAAAAAGAGTTTTGACTACTGCACCAGGAGAAGGATGGGACACTTATTGCCGTGTGGATCTAGTGATGACAGTGTAACTGTTAACGGA AGCCCTACAGCAAGTACTAGTGGTGATGTAGAGGAAATCAGAATGAAACTCAATCGGTCACTGCAAGGTGAAGACCAAGGTGATAAACTGGTTCAGGCTT TGCATGATGCAGCCAGGGCTTTTGAGCTGGCAATCAAGGAGCGAGGCCTCATTTCAAAGTTTTCCTGGTTCTCAACAGCCTGGCTTGGTGGAGATGGTAG CGCATGGTTGAAAACATTGTCTTATCAGGCTGCTGTATATTCCTTATTGCAAGCAGCTTGTGATATTTCATCGCGAAGCAGTAGTGGAGACAAGGATATA AACATTTTCGCTCAGAGAAGCTTATTGCGCCTCTCTGCTCCCTTGGAGAGCCTGATCAGGGAAAAGTTATCTGCCAAGCAACTTGAAGCTGGTGAATGGT TTTGGGTTGAGCAAATTCCATTGGTTGTGAAGTCCTTTATAAATTATTTTGAAGGGGACCCACGTTTTACTGCCGCCACTGCCGTGTCTGGGAAAGGCAT GTACTTGAGCTCTGACTGTGGAACTGAACTCCTGTTACTTGCATTGACTTGTATAGCTGCAATCACAAAACTTGGCCCTTCTAAAGTTTCTTGCCCTCAA TTATTTCCAGTAGATGTTACTGGAAAGTTGATGGATATGTTAGTTGATCTGATTCCTATACACCAGGCTTATTCTTCAATAAAGGAAATAGGTCTACACA GAGAATTTCTTGTCCATTTTGGTCCTCGGGCAGCAGCATGCAGGGTAAAAGACGGTGTTGGTTCAGAAGAAGCTGTTTTCTGGGTTAATCTGGTGCAAAA GCAGCTGCAACGAGCTCTAGACAGAGAGAAAATATGGTCGAGACTGACAACATCTGAAAGTATTGAGGTACTGGACAAGGATTTGGCTATATTTGGATTT TTTATTGCCTTGGGAAGAAGCACACAATCCTTCTTATCTGCAAATGGATTTGATGTAGTAAATGAACCTATTGATAGTTTCATCAGGTATTTAATAGGTG GTAGTGTATTATACTATCCTCAACTTTCATCAATAAGCTCTTATCAGTTGTATGTGGAGGTTGTTTGTGAGGAGCTGGACTGGCTTCAATTCTATCCAGG TCACACCAACACCTTGAAACCATCTCAAGGTCATGGAAATAAAGAAAATCCTCCCAATGTTGAAGCTATTCCTCAAGTACTTGATGTCTGCTCTCATTGG ATGCAAAGCTTTATTAAATATAGTAAATGGCTAGAGAATCCTTCCAATGTCAAGGCAGCCAGATTCCTATCCAAGGGGCACAAGAAACTAATGGAATGTG TGGATGAACTAGGGATATCAAGGATTGTTGCAAAGAATGGTAGCAACTTCTCTGTTCAGAGAATTGAATCTAGTTCTTATTCCCCAACAAAGCAGGACAT AGAATCTTTTGAAAAGGCACTAGAAGATGTTGAAGAAGCTCTTTTACGGTTGGAAAATTTGCTTCAAGAGGTTCATGTTTCAAGCTCTATTCAGGGTAAA GAACAGTTGAAAGCTGCTTGTTCTGATCTTGAGAAAATAAGGAAACTGAAGAAAGAGGCTGAATTCTTGGAGGTTTCATTCAGAGCAAAAGCAGAATCTT TAGAGCAAGGAGACGAGGAAAATAATTTGCAATCTTCTGGTCGTGAGCAGCAACAGTTGTTAGAGGGGAGAATGGCAAAGAATGAGTCCACAAGCTCAGA TACAAGTGACAGCAAAATTCAAGGACTGTGGGGCTTTATAGGTTCCAAGCAGCCTGATCCTGAATTACCAGTATCAAACGAATCTCAAGATGAAAAGATT GGCGGAATTACGTCAAGTTTGGGAGTTGAAAATTCAGAGTCAAGCAAAATTCAACGTTTTGAACTTATAAGGAATGAGCTGATGGAACTAGAAAAACGGG TTAAAAGAAGTGCCGATCAGTACGGAAACGAAGAGAACATTGAAGTTCCAGATGATGTTCAGAGTTCTGCATTAATTCAGGCCAAGAAGAAAGACGATAT TATTTCAAGCTCAGTAGAAAAACTGAAGGAAACTAGCATGAATGTCTTGCAAGGAACACAGCTCCTAGCCATTGATGTTGGTGCAGCAATGGGGCTGGTC AGCAGGTCCTTGGTTGGAGATGAGCTAACAGCGAAAGAGAAACGTTCTCTTCAAAGAACTGTGACAGATGTGGCATCTGTGGTTCCTATTGGCATCCTCA TGCTTCTTCCTGTCACTGCAGTCGGACATGCAGCAATGCTAGCTGCTATTCAGCGATATGTGCCGGGTTTGATACCTTCGACATATGGACCCGAAAGGCT GTATCTCTTGAGGCAGCTTGAGAAAGTGAAGCAGATTGAAGCCGCTGAAGTGGACGATCCCAGAGAAAGCAACGATACATCATCATGA
AA sequence Show only first row Show all	>Lus10021329 pacid=23178208 polypeptide=Lus10021329 locus=Lus10021329.g ID=Lus10021329.BGIv1.0 annot-version=v1.0 MGTPTEGLAWQNRRPSSSPCLSGNSVQTEALLKRTVQFGYLMHCSRARGRSLVRLVLLGNGSCSYPFAGFRKKSFDYCTRRRMGHLLPCGSSDDSVTVNG SPTASTSGDVEEIRMKLNRSLQGEDQGDKLVQALHDAARAFELAIKERGLISKFSWFSTAWLGGDGSAWLKTLSYQAAVYSLLQAACDISSRSSSGDKDI NIFAQRSLLRLSAPLESLIREKLSAKQLEAGEWFWVEQIPLVVKSFINYFEGDPRFTAATAVSGKGMYLSSDCGTELLLLALTCIAAITKLGPSKVSCPQ LFPVDVTGKLMDMLVDLIPIHQAYSSIKEIGLHREFLVHFGPRAAACRVKDGVGSEEAVFWVNLVQKQLQRALDREKIWSRLTTSESIEVLDKDLAIFGF FIALGRSTQSFLSANGFDVVNEPIDSFIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLQFYPGHTNTLKPSQGHGNKENPPNVEAIPQVLDVCSHW MQSFIKYSKWLENPSNVKAARFLSKGHKKLMECVDELGISRIVAKNGSNFSVQRIESSSYSPTKQDIESFEKALEDVEEALLRLENLLQEVHVSSSIQGK EQLKAACSDLEKIRKLKKEAEFLEVSFRAKAESLEQGDEENNLQSSGREQQQLLEGRMAKNESTSSDTSDSKIQGLWGFIGSKQPDPELPVSNESQDEKI GGITSSLGVENSESSKIQRFELIRNELMELEKRVKRSADQYGNEENIEVPDDVQSSALIQAKKKDDIISSSVEKLKETSMNVLQGTQLLAIDVGAAMGLV SRSLVGDELTAKEKRSLQRTVTDVASVVPIGILMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGPERLYLLRQLEKVKQIEAAEVDDPRESNDTSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10021329 [exp]	0	1
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	1.0	0.9564
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	2.8	0.8903
AT5G35970			P-loop containing nucleoside t...		Lus10024975 [exp]	3.9	0.8834
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	4.0	0.8795
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10035727 [exp]	5.6	0.8403
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	8.1	0.8777
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	8.4	0.8754
AT1G69360			Plant protein of unknown funct...		Lus10037122 [exp]	9.7	0.8556
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	10.2	0.8783
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	11.7	0.8568

Compare expression of checked genes

Lus10021329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.