Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36090 257 / 3e-84 F-box family protein (.1) AT3G44326 233 / 4e-74 F-box family protein (.1) AT2G27310 224 / 8e-71 F-box family protein (.1) AT5G48170 40 / 0.001 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017006 [exp] 585 / 0 AT2G36090 255 / 4e-83 F-box family protein (.1) Lus10013309 [exp] 214 / 5e-67 AT2G27310 247 / 4e-80 F-box family protein (.1) Lus10003731 [exp] 127 / 1e-33 AT2G27310 160 / 3e-46 F-box family protein (.1) Lus10028024 [exp] 127 / 2e-33 AT2G27310 158 / 4e-45 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208400 [exp] 363 / 2e-125 AT2G36090 275 / 7e-91 F-box family protein (.1) Potri.004G199300 [exp] 270 / 9e-89 AT2G27310 248 / 3e-80 F-box family protein (.1) Potri.009G160700 [exp] 251 / 2e-81 AT2G27310 221 / 9e-70 F-box family protein (.1) Potri.002G054500 [exp] 134 / 4e-36 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.001G452000 [exp] 124 / 2e-32 AT2G36090 115 / 2e-29 F-box family protein (.1) Potri.005G208200 [exp] 122 / 1e-31 AT2G27310 130 / 3e-34 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021330 pacid=23178301 polypeptide=Lus10021330 locus=Lus10021330.g ID=Lus10021330.BGIv1.0 annot-version=v1.0 ATGGCTTCTAATTCAGGCGATCGAGAAGCGTCGTCCTCCGCCTCTCTGTCGGCGATTCACCAGGATATTATCCGGGCGCATATTCTGACGAGGCTCGACG GCGTCGCACTCCTCTCCGCCGCTTGCTGCTCCACCGAGCTAAGCTCCCTCGCTTCTCAGGAGAATTTGTGGGAGAATGTATGCCGGTCAACGTGGCCGTC TACCGACGTCCCTCACGTTCAGGAAGTGATATCTACTTTCCCCAACGGCCACCGATCCTTCTTCTCCGCTTCTTTTCCTCTGGTCGCCGATATGGAGCCT TACTCCAAACCAGCGGAATCCGATTCGGACATAATATTCTCGGAGGAATTGATTTCCGCGGTGGATATCTACCACCGTGGGGAGCTGATTTTCAGCAGGG CGGTGGAGACCGAGACTGTTACGGGGTGGTTCCGGTGCTCGCCTTTTAGAATTGATTTGTTGGATCCAAAGGACACGTGTCCGACTAGGATACCGAGGCC GGAGACGGAGGCGGCCTGCCAGGATCTAGCGGAGGAACTGACGCTGAGCTGGGTTCTGATCGATCCGGAAGGGCGGCGGGCGGTGAACCTGTCGAGCCAC CGCCCTGTATCGGTTCAGAAGCACTGGCTGAGCGGGGACGTTCACGCGCGATTCGGGGTGATATTGGCCGGAGAGAGAGGGACAGCGTTGGAGTTTGTTC AGTGCGGGATAGTGGTCACGTGTGGGGGTGGGGTCCAGGAAGGGGCAATGCACGTGAGGGAGGTGAGCCTGCAGATGGAGAACATGGACGGAATGTACAT AAACGGGAAGGACAGTATGGGGATTTTGGATAAGACGTTCGAGGGCAAAAAGGGGATGATGAAGGAAAGAGGGAGGAGTAAATACGAAGAGTTTCAGGGG TTGAAACGACAGCGTAGAGAGAGGAAACGGAGGGCAGAAGGGGCAATGGACACAATGTGCGTAGCGTCTGCAGTGTTGATATTTGCCTCTCTTGCCTTGC TTCTCATATTGAGGCGATGA
AA sequence Show only first row Show all	>Lus10021330 pacid=23178301 polypeptide=Lus10021330 locus=Lus10021330.g ID=Lus10021330.BGIv1.0 annot-version=v1.0 MASNSGDREASSSASLSAIHQDIIRAHILTRLDGVALLSAACCSTELSSLASQENLWENVCRSTWPSTDVPHVQEVISTFPNGHRSFFSASFPLVADMEP YSKPAESDSDIIFSEELISAVDIYHRGELIFSRAVETETVTGWFRCSPFRIDLLDPKDTCPTRIPRPETEAACQDLAEELTLSWVLIDPEGRRAVNLSSH RPVSVQKHWLSGDVHARFGVILAGERGTALEFVQCGIVVTCGGGVQEGAMHVREVSLQMENMDGMYINGKDSMGILDKTFEGKKGMMKERGRSKYEEFQG LKRQRRERKRRAEGAMDTMCVASAVLIFASLALLLILRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36090			F-box family protein (.1)		Lus10021330 [exp]	0	1
AT2G39710			Eukaryotic aspartyl protease f...		Lus10040279 [exp]	3.7	0.8968
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	7.3	0.9017
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10041863 [exp]	10.5	0.8954
AT1G11655			unknown protein		Lus10001141 [exp]	14.7	0.8815
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	16.1	0.8773
AT5G59070			UDP-Glycosyltransferase superf...		Lus10016475 [exp]	16.2	0.8862
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10013676 [exp]	17.3	0.8658
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	18.7	0.8828
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	19.0	0.8605
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	20.4	0.8892

Compare expression of checked genes

Lus10021330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.