Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08370 282 / 5e-92 DCP1, ATDCP1 decapping 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017007 [exp] 553 / 0 AT1G08370 351 / 8e-120 decapping 1 (.1) Lus10034186 [exp] 300 / 1e-98 AT1G08370 380 / 2e-131 decapping 1 (.1) Lus10043399 [exp] 298 / 6e-98 AT1G08370 375 / 2e-129 decapping 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208600 [exp] 371 / 9e-127 AT1G08370 335 / 1e-113 decapping 1 (.1) Potri.016G075200 [exp] 360 / 2e-122 AT1G08370 294 / 1e-97 decapping 1 (.1) Potri.009G160200 [exp] 306 / 3e-101 AT1G08370 377 / 7e-130 decapping 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF06058 [flax] [poplar] DCP1 Dcp1-like decapping family
Representative CDS sequence Show only first row Show all	>Lus10021331 pacid=23178166 polypeptide=Lus10021331 locus=Lus10021331.g ID=Lus10021331.BGIv1.0 annot-version=v1.0 ATGTCTCAGACGGGGAAATTGATGCCGAATCTAGATCAGCAAAGCACTAAGGTCCTCAATCTCACCGTGCTTCAGAGAATGGATCCATTTATCGAAGAGA TTCTGATCACGGCCGCTCACGTCACTTTCTACGAGTTCAACATCGACAATAGTCAGTGGGGTCGGAAGGATGTCGAAGGATCTCTATTTGTGGTTAAGAG CTTCACTTTCATTGCCATGTCTGAGAAACAAACGGTTCATGAATGGACAGAAAACCTGGTGGAGAATCTATTAGGAGATTTTGAGTATGAGATTCAGCTT CCCTATCTGTTGTATCGGAATCCAAATCAAGAAGTTAATGGGATATGGTTTTACAATCCACGTGAATGCGAAGATGTAGCCAAGCTCTTTAGCAGGATTC TTAATGCATACTCAAAGGTTCCTTCAAAACCTAAAGTGCCTTCAAACCAGCGTGAGTTTGAGGAGCTTGAAGCAGTTCCAAACATATCAGTGATCGAAGG ACCACTGGAGCCATCACCAATGCCTAGTGTTGCATCTGAGGTTCCTCATGATTCTTCATTTGAGAATTTCTTTAGTGCAGGTGCAAATATTGGCAACACT GCTCCCAGTATGGCAAACTCTAGACAAAACTACCATCCTTCGTCATCGGTAGCCAATATGACTAGTGCTGTCTCGTCTCCCTCATTAACCCCTCAAGTCC TACCCCTCCCTCTTTCATCCATCTCGGGTTCAAAGGCTCACCACGAAACCCCTGATTCAATGAGTGCTGGCAATCGGATTGCCAGTCTGCTGAAGCCTTC TTTATTCTCTGTGCCATCTGCCACTTCATCTTCGTTGATGATACCTCCTGTCTCTTCATCTCTCCCTACTGCTGCTCAAAATCAACCTGTAAGCATGCAA CGGTCATACGGCGCCCCAATGCTTCAACCTTTCCCCCCTCCCACTCCACCTCCATCTCTTACTCCAGCTACTGCCACTACACCTCTTCTTAGCCGAGACA AAGTCCGCGATGCACTTTTGAAGCTTGTTCAGCTGGTTCAACTAACTCTATTCATGGTGGCAGGACGACCAATTCATCGACATGTTTTATCAAGCTTTGA CAAAGGTACAACATACATGAAAGAATCCATGGTTGAAGATAAGTGGGCTTTCATGGCTGGCTGCGGTCAGAAACTGCCTTCCCGGCCAGCCGATCTTTGT ATCCTGCGGGCACTAGTTACAGTGGAGTCTGCTGTAGAGGGCCTTAGTTTGTTAGGGATCGTTAGCAAGCTCAACTCTGTGCATTACTCATCCCACATGT TGTAA
AA sequence Show only first row Show all	>Lus10021331 pacid=23178166 polypeptide=Lus10021331 locus=Lus10021331.g ID=Lus10021331.BGIv1.0 annot-version=v1.0 MSQTGKLMPNLDQQSTKVLNLTVLQRMDPFIEEILITAAHVTFYEFNIDNSQWGRKDVEGSLFVVKSFTFIAMSEKQTVHEWTENLVENLLGDFEYEIQL PYLLYRNPNQEVNGIWFYNPRECEDVAKLFSRILNAYSKVPSKPKVPSNQREFEELEAVPNISVIEGPLEPSPMPSVASEVPHDSSFENFFSAGANIGNT APSMANSRQNYHPSSSVANMTSAVSSPSLTPQVLPLPLSSISGSKAHHETPDSMSAGNRIASLLKPSLFSVPSATSSSLMIPPVSSSLPTAAQNQPVSMQ RSYGAPMLQPFPPPTPPPSLTPATATTPLLSRDKVRDALLKLVQLVQLTLFMVAGRPIHRHVLSSFDKGTTYMKESMVEDKWAFMAGCGQKLPSRPADLC ILRALVTVESAVEGLSLLGIVSKLNSVHYSSHML

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10021331 [exp]	0	1
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10036627 [exp]	7.9	0.6293
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	12.3	0.6397
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10041769 [exp]	15.5	0.6859
AT4G13340		LRX3	leucine-rich repeat/extensin 3...		Lus10038631 [exp]	81.3	0.5375
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10035596 [exp]	97.9	0.5511
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10007689 [exp]	160.6	0.4974
					Lus10033246 [exp]	203.1	0.5125

Compare expression of checked genes

Lus10021331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.