Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06200 146 / 3e-44 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT3G11550 145 / 1e-43 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT2G36100 133 / 5e-39 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT2G27370 116 / 3e-32 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT5G15290 99 / 9e-26 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT1G14160 89 / 8e-22 Uncharacterised protein family (UPF0497) (.1) AT3G06390 46 / 4e-06 Uncharacterised protein family (UPF0497) (.1) AT1G03700 42 / 7e-05 Uncharacterised protein family (UPF0497) (.1) AT4G03540 42 / 9e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017008 [exp] 230 / 1e-76 AT2G27370 228 / 5e-76 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Lus10021333 [exp] 158 / 1e-48 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017009 [exp] 155 / 2e-43 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004205 [exp] 141 / 5e-42 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10029409 [exp] 140 / 1e-41 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10015375 [exp] 105 / 2e-28 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 101 / 9e-27 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 86 / 2e-20 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10036770 [exp] 48 / 4e-07 AT1G14160 119 / 2e-34 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208800 [exp] 160 / 9e-50 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 159 / 5e-49 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 134 / 2e-39 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.009G160000 [exp] 109 / 3e-29 AT2G27370 146 / 2e-43 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Potri.012G032300 [exp] 98 / 2e-25 AT5G15290 207 / 1e-68 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Potri.008G088700 [exp] 81 / 7e-19 AT1G14160 163 / 3e-51 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 47 / 1e-06 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 44 / 2e-05 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 42 / 8e-05 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.013G131700 [exp] 40 / 0.0004 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10021332 pacid=23178236 polypeptide=Lus10021332 locus=Lus10021332.g ID=Lus10021332.BGIv1.0 annot-version=v1.0 ATGTCGACTTCAATTGAGATGACAGAGGAAAGCAGCGCTGTGGCGAAGGGAAAAGCGCCTCTGATCACCACAACTACGTACAGCCACGACGACGGTCATG CAAAGGGAAGAAACGATAGCAATAATTATAAGACTGTTGGTGGGTACAAGAAGGGAATTGCCATTTTCGACTTCGTCCTAAGGCTAGCAGCCGTCGTTGC TGCTCTGGCTGCTGCTGGTACAATGGGGAGCAGCGAGCAAACCCTCCCCTTCTTCACCCAGTTCTTCCAGTTCCAGGCCAGTTACGACGACCTCCCTACC TTCCAGTTCTTTGTGATCGCAATGGCAATCGTGGGAGGCTACTTGGTTCTGTCTCTCCCGTTCTCAATCGTCCTCATCATCCGCCCACAAGCCGTAGCTC CGAGGCTGCTACTCGTGCTCCTTGACACGGTGGCTCTGACTCTGAACACGTCAGCAGCAGGGGCAGCGGCAGCGATAGTGTACTTGGCTCACAACGGGAA CTCTAGCGCCAACTGGCTCGCAATCTGCCAGCAGTTCGGCGACTTCTGTCAGAAAGTCAGTGGAGCAGTTGTCGCTTCGTTTGTGGCAGCTGTGGCCTTG ATGTTCTTGGTTGTCCTCTCTGGCTTGGCTCTCCGAAGGCATTAG
AA sequence Show only first row Show all	>Lus10021332 pacid=23178236 polypeptide=Lus10021332 locus=Lus10021332.g ID=Lus10021332.BGIv1.0 annot-version=v1.0 MSTSIEMTEESSAVAKGKAPLITTTTYSHDDGHAKGRNDSNNYKTVGGYKKGIAIFDFVLRLAAVVAALAAAGTMGSSEQTLPFFTQFFQFQASYDDLPT FQFFVIAMAIVGGYLVLSLPFSIVLIIRPQAVAPRLLLVLLDTVALTLNTSAAGAAAAIVYLAHNGNSSANWLAICQQFGDFCQKVSGAVVASFVAAVAL MFLVVLSGLALRRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	0	1
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	1.7	0.9606
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	2.8	0.9507
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	2.8	0.9582
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	3.2	0.9445
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	3.5	0.9571
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	3.5	0.9359
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012183 [exp]	3.7	0.9293
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029331 [exp]	4.0	0.9258
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10033007 [exp]	4.2	0.9163
AT4G34800			SAUR-like auxin-responsive pro...		Lus10012182 [exp]	6.3	0.9107

Compare expression of checked genes

Lus10021332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.