Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06200 184 / 2e-59 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT3G11550 179 / 4e-57 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT2G36100 164 / 4e-51 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT2G27370 134 / 2e-39 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT5G15290 115 / 1e-32 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT1G14160 106 / 8e-29 Uncharacterised protein family (UPF0497) (.1) AT1G03700 49 / 1e-07 Uncharacterised protein family (UPF0497) (.1) AT1G17200 50 / 2e-07 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT4G03540 49 / 3e-07 Uncharacterised protein family (UPF0497) (.1) AT3G06390 44 / 2e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017009 [exp] 265 / 6e-82 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029409 [exp] 208 / 2e-68 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10004205 [exp] 207 / 4e-68 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017008 [exp] 187 / 2e-60 AT2G27370 228 / 5e-76 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Lus10021332 [exp] 179 / 4e-57 AT2G36100 229 / 1e-76 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) Lus10015375 [exp] 119 / 7e-34 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 117 / 5e-33 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 101 / 1e-26 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10026196 [exp] 52 / 3e-08 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208800 [exp] 204 / 2e-67 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 199 / 5e-65 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 158 / 3e-49 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.009G160000 [exp] 129 / 5e-37 AT2G27370 146 / 2e-43 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Potri.012G032300 [exp] 124 / 7e-36 AT5G15290 207 / 1e-68 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Potri.008G088700 [exp] 99 / 6e-26 AT1G14160 163 / 3e-51 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 49 / 2e-07 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.008G205000 [exp] 48 / 7e-07 AT3G06390 130 / 4e-38 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 46 / 3e-06 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 45 / 7e-06 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10021333 pacid=23178255 polypeptide=Lus10021333 locus=Lus10021333.g ID=Lus10021333.BGIv1.0 annot-version=v1.0 ATGTCAACCACCATCGATGTCCCGGAGTCAAGCTCAGTAGCCAAGGGGAAAGCACCACTCATTGCACTGGCCAAGCATGGCAAGTCAGGTGGGTACCATA GAGGGGTAGCCATATTTGACTTCATCCTCAGGATTGGCGCTGTAATATCTGCACTAGCAGCAGCTGCCACCATGGGGACTAGTGATGAAACCCTCCCTTT CTTCACTCAGTTCCTGCAGTTCCAAGCCAGCTATGATGATCTCCCTACTTTCCAGTTCTTCGTGATAGCTATGGGGATCGTTGGTGGCTACCTTGTCCTG TCCCTACCTTTCTCCATCGTCTGCATTGTTCGTCCCCAGGCTGCTGCTCCACGCTTCCTCCTCCTCGTTCTCGACATTGTGGTACTGACCCTGAACACCG CAGCAGCATCTGCAGCGGCGGCCATAGTGTACTTGGCACACAATGGGAACAGCAACACAAACTGGCTAGCAATATGCAACCAGTTTGGTGACTTCTGCCA GAAAGTGAGCGGATCTGTGGTGGCGGCGTTTGTGACCGTGCTTATCTTCGTCATCCTAATCATCCTCTCTGCTGTTGCTCTAAGGAGGCACTAG
AA sequence Show only first row Show all	>Lus10021333 pacid=23178255 polypeptide=Lus10021333 locus=Lus10021333.g ID=Lus10021333.BGIv1.0 annot-version=v1.0 MSTTIDVPESSSVAKGKAPLIALAKHGKSGGYHRGVAIFDFILRIGAVISALAAAATMGTSDETLPFFTQFLQFQASYDDLPTFQFFVIAMGIVGGYLVL SLPFSIVCIVRPQAAAPRFLLLVLDIVVLTLNTAAASAAAAIVYLAHNGNSNTNWLAICNQFGDFCQKVSGSVVAAFVTVLIFVILIILSAVALRRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10021333 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	1.0	0.9709
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	2.4	0.9673
AT1G05030			Major facilitator superfamily ...		Lus10035315 [exp]	2.8	0.9639
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	3.0	0.9670
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	5.5	0.9549
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	8.5	0.9361
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	8.8	0.9490
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	8.8	0.9461
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	8.9	0.9491
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	11.5	0.9539

Compare expression of checked genes

Lus10021333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.