Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22350 217 / 1e-68 ELM1 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) AT5G06180 137 / 4e-38 Protein of unknown function (DUF1022) (.1), Protein of unknown function (DUF1022) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017009 [exp] 153 / 3e-42 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005191 [exp] 136 / 1e-37 AT5G22350 626 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Lus10013300 [exp] 136 / 1e-37 AT5G22350 626 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075500 [exp] 154 / 1e-44 AT5G22350 569 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Potri.009G159900 [exp] 144 / 8e-41 AT5G22350 629 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Potri.004G197000 [exp] 142 / 8e-40 AT5G22350 608 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF06258 [flax] [poplar] Mito_fiss_Elm1 Mitochondrial fission ELM1
Representative CDS sequence Show only first row Show all	>Lus10021334 pacid=23178284 polypeptide=Lus10021334 locus=Lus10021334.g ID=Lus10021334.BGIv1.0 annot-version=v1.0 ATGGTGGCAATGGTGATCAGAATTGTTGATATTTATTTCTTCCTCTTCAGGGATGGGCCATTGTTGGTCGTTGCCTCTGGGAGGGACACCATTCCTGTTG CAAGATCAATAAGACGGTTAGCTCCAGAAAATGTCTTTGTTGTACAGATACAGCATCCGAGATCGAATCTCAGTAGGTTTGATCTGGTGACTACTCCCCA TCACCACTACTACCCGCTGACTCCCCATGGTCAGCAACAAGTCCCTTGGTTTCTTCGGAGGTGGATAACCCCAAGAGAGCCTCCTGATAGTCGTGTGATA CTCACTGTTGGAGCCCTTCATCAAGCTGATTCTGCTGCGTTAAGGGCTGCTGCTTCTTTCTGGCATGAAGAGTTGATGGATATGATGATTATCCTTGGTT TTTACTACGTAGGTCCAAATCCACATATGGGACATCTAGCTTGGGCTGATGCGTTTGTCATCACAGCCGATTCTGTAAGCATGTTGAGTGAAGCCTGCAG TACTGGGAAGCCTGTATATGTCAGAGGGGCTGAAAGGTGTACATGGAAGTTTGCCGATTTCCAGAAGCGTTGGAAGCAATTTGGAGTGGTCAGACTATTC ACTGGCCAAGAGAACGTATCAGAGAACTGGACCTACTCTCCACTGAATGATACTGCAACGGCAGCTACTGAAGTCGTCGAAGCGCTTTCAGAGCGCGGAT GGATTATATCTCCATCACCATGA
AA sequence Show only first row Show all	>Lus10021334 pacid=23178284 polypeptide=Lus10021334 locus=Lus10021334.g ID=Lus10021334.BGIv1.0 annot-version=v1.0 MVAMVIRIVDIYFFLFRDGPLLVVASGRDTIPVARSIRRLAPENVFVVQIQHPRSNLSRFDLVTTPHHHYYPLTPHGQQQVPWFLRRWITPREPPDSRVI LTVGALHQADSAALRAAASFWHEELMDMMIILGFYYVGPNPHMGHLAWADAFVITADSVSMLSEACSTGKPVYVRGAERCTWKFADFQKRWKQFGVVRLF TGQENVSENWTYSPLNDTATAATEVVEALSERGWIISPSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10021334 [exp]	0	1
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	7.5	0.8405
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	8.8	0.8404
					Lus10000543 [exp]	12.1	0.7396
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	12.2	0.8168
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011082 [exp]	14.1	0.7908
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	14.7	0.8145
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	16.3	0.8143
AT1G08790			Protein of unknown function (D...		Lus10042536 [exp]	17.0	0.7557
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10017550 [exp]	17.2	0.7577
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	18.1	0.8030

Compare expression of checked genes

Lus10021334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.