Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11540 1503 / 0 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04240 295 / 2e-85 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G32450 70 / 7e-12 Calcium-binding tetratricopeptide family protein (.1) AT5G56290 68 / 2e-11 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT5G63200 60 / 7e-09 tetratricopeptide repeat (TPR)-containing protein (.1) AT1G22700 55 / 4e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT1G05150 57 / 6e-08 Calcium-binding tetratricopeptide family protein (.1) AT5G37130 57 / 7e-08 Protein prenylyltransferase superfamily protein (.1) AT4G37460 52 / 2e-06 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37590 52 / 2e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017009 [exp] 1679 / 0 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004779 [exp] 290 / 9e-84 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 289 / 2e-83 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 285 / 7e-82 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010627 [exp] 75 / 1e-13 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10033182 [exp] 75 / 2e-13 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10013661 [exp] 68 / 2e-11 AT5G63200 801 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10003112 [exp] 62 / 2e-10 AT3G04240 305 / 2e-98 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021972 [exp] 61 / 6e-10 AT1G22700 312 / 5e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208900 [exp] 1597 / 0 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 1581 / 0 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.019G025600 [exp] 285 / 6e-82 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 277 / 5e-79 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G234900 [exp] 69 / 1e-11 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.002G027900 [exp] 67 / 7e-11 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.012G092000 [exp] 64 / 3e-10 AT5G63200 759 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Potri.004G080800 [exp] 60 / 9e-09 AT5G17270 909 / 0.0 Protein prenylyltransferase superfamily protein (.1) Potri.001G473100 [exp] 59 / 1e-08 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.019G085200 [exp] 58 / 1e-08 AT1G22700 324 / 6e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10021336 pacid=23178292 polypeptide=Lus10021336 locus=Lus10021336.g ID=Lus10021336.BGIv1.0 annot-version=v1.0 ATGGCATTCCCTGAGGATGCTGTTGGTAATGGGAAAGAGGGGGAGCCTGCCGCAGGAGATAATGGTTTCATTGAGCGTTCCGAATCTTCTCCTTGTACCA GTTGCAGTCCTGCTGCTGTGGCTTCTCTTCAGAAGCAGTTTCATGGGAAGGATGCCTTGAATTTTGCTAATATACTCCGATCCAGGAACAAGTTTGCTGA TGCTCTTACTCTTTATGAGAGGGTATTGGAGGAAGATAGTGGAGATGTGGAAGCTTATATCGGGAAAGGGATTTGTCTACAGATGCAGAACATGGGAAGG CTGGCTTTCGACAGTTTTGCTGAAGCGGTCAGGATTGAACCGCAGAATGCATGTGCTCTCACTCACTGTGGCATTCTTTACAAAGATGAGGGTCGTTTGG TTGATGCTGCCGAGTCATATCAGAAGGCTCTAACGGCAGACCCTTCATATAAGCCAGCTGCTGAATGTCTAGCCATTGTGTTAACAGATCTTGGAACCAG CTTAAAACTTTCTGGCAATGTCCAAGAAGGAATCCAAAAGTACTATGAAGCTCTTAAAATAGACCCACACTATCCGGCTGCATATTACAATCTTGGCGTA GTGTATTCTGAAATGATGCAATATGACGCTGCCCTTAGTTGCTATGAAAAGGCGGCCTTGGAGAGGCCCATGTATGCAGAAGCATATTGCAACATGGGTG TAATATACAAAAACCGTGGTGATTTGGAGTCTGCAATTGCCTGTTATGAGAGATGTTTAGCCGTTTCACCTAATTTTGAGATAGCTAAAAATAATATGGC AATAGCATTGACAGACTTGGGCACAAAGGTTAAACTGGAGGGAGACATCAACCAAGGTGTGATATATTACAAAAAGGCTTTATACTATAATTGGCACTAT GCTGATGCTATGTACAACCTCGGTGTTGCTTATGGTGAGCTGCTGAAGTTTGATCAGGCAATTGTGTTCTATGAACTTGCTTTCCACTTCAATCCTCATT GTGCTGAAGCTTGCAATAATTTGGGAGTAATATACAAGGATCGGGATAATCTTGATAAAGCAGTGGAGTGTTACCAGTTGGCTTTATCTATCAAACCAAA CTTCTCTCAGTCATTGAATAATCTTGGCGTTGTGTACACAGTCCAGGGAAAAATGGATGCAGCTGCAAGCATGATTGAGAAAGCTATCTTAGCTAATCCT ACTTACGCTGAAGCATATAATAACTTAGGTGTCCTTTACAGAGATGCTGGAAATATATCTATGGCTATTACTGCATATGAGCAATGCCTGAAGATAGATC CAGATTCTCGTAATGCTGGCCAGAATCGATTACTTGCTATGAACTATATACACGAGGGTCGGGATGATGAGCTATATGAGACACACAGAGACTGGGGTAT TCGCTTTTTGAGGCTGTACCCTCAATATACTTCTTGGGACAACCCGAAGGAACCAGAAAGACCCCTTGTTATTGGATATGTTTCTCCAGATTATTTTACT CATTCTGTATCTTATTTCATCGAGGCTCCCCTTGTCTACCATGACTATTCAAAGTTCAAGGTGGTTGTGTATTCAGCAGTTGTTAAGGCCGATGCAAAAA CTAATAGATTCAAAGAGAAAGTGCTTAAAAAGGGAGGGATGTGGAGAGATATATATGGAATTGATGAAAAGAGGGTTGCCAGTTTGGTTAGAGATGACAA AGTTGACATCTTAGTGGAACTCACTGGCCATACTGCTAACAATAAGTTGGGAACAATGGCTTGCCGACCAGCGCCTCTTCAGGTTACATGGATAGGCTAT CCAAATACAACTGGTTTGCCTAGCATTGATTACAGAATTACCGATTCTCTGGCTGACCCTCCTGGCACAAAACAAAAGCATGTTGAGGAGTTAGTACGGT TACCAGAGTCTTTTCTTTGTTATACTCCGTCCCCAGAAGCTGGGCTAGTTTCTGCTGCCCCTGCTGTGTCTAATGGCTTTGTAACATTTGGCAGTTTTAA CAATCTGGCAAAGATAACGCCTAAAGTATTACAAGTTTGGGCTAGGATTCTGTGTGCAGTTCCGAACTCTCGCCTGGTTGTTAAATGCAAACCGTTCTGT TCCGATAGCGTTAGACAGAAATTTCTTACAACCTTGGAGCAGCTGGGATTGGAATCATTGCGTGTTGATCTTCTGCCACTAATTCTTCTAAACCATGATC ATATGCAAGCATATTCTCTCATGGACATCAGTTTGGATACGTTCCCATATGCTGGAACGACGACAACCTGTGAATCATTGTTCATGGGAGTGCCATGCGT TACTATGGCGGGAGCAGTACATGCCCACAATGTTGGTGTTAGTCTTCTCAGCAAAGTAGGGTTAGGACATTTGGTAGCCAAAAATGAAGATGAATACATT CAACTGGCTGTAAACCTGGCTTCTAATGTTGATGCTCTTGCAAGGTTGAGAATGAGCCTTCGAGATCTTATGACCAAGTCGCCGCTATGCGATGGAGCCA ACTTCATCCTTGGCTTGGAGTGCTCATACCGGGAAATGTGGCGGAGATACTGCATGGGAGACGTGCCATCTATAAAACGCATGGAACTCATACAACAGCA GCAAGGTAATTCAGATGTACCGAGTGATAACTCTCAAGCGACAACTATGTCGAGTATTATAAGCTCAAGAGACGAATTGCATGGGTCTATGAAGGAGAAC GGATTTGCTGTTGTTGCTGCATCACCCGTGGTAAATAATTCTTGTGGTGAAAATGGTGTCAGTTAG
AA sequence Show only first row Show all	>Lus10021336 pacid=23178292 polypeptide=Lus10021336 locus=Lus10021336.g ID=Lus10021336.BGIv1.0 annot-version=v1.0 MAFPEDAVGNGKEGEPAAGDNGFIERSESSPCTSCSPAAVASLQKQFHGKDALNFANILRSRNKFADALTLYERVLEEDSGDVEAYIGKGICLQMQNMGR LAFDSFAEAVRIEPQNACALTHCGILYKDEGRLVDAAESYQKALTADPSYKPAAECLAIVLTDLGTSLKLSGNVQEGIQKYYEALKIDPHYPAAYYNLGV VYSEMMQYDAALSCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVIYYKKALYYNWHY ADAMYNLGVAYGELLKFDQAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANP TYAEAYNNLGVLYRDAGNISMAITAYEQCLKIDPDSRNAGQNRLLAMNYIHEGRDDELYETHRDWGIRFLRLYPQYTSWDNPKEPERPLVIGYVSPDYFT HSVSYFIEAPLVYHDYSKFKVVVYSAVVKADAKTNRFKEKVLKKGGMWRDIYGIDEKRVASLVRDDKVDILVELTGHTANNKLGTMACRPAPLQVTWIGY PNTTGLPSIDYRITDSLADPPGTKQKHVEELVRLPESFLCYTPSPEAGLVSAAPAVSNGFVTFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC SDSVRQKFLTTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLFMGVPCVTMAGAVHAHNVGVSLLSKVGLGHLVAKNEDEYI QLAVNLASNVDALARLRMSLRDLMTKSPLCDGANFILGLECSYREMWRRYCMGDVPSIKRMELIQQQQGNSDVPSDNSQATTMSSIISSRDELHGSMKEN GFAVVAASPVVNNSCGENGVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10021336 [exp]	0	1
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	2.0	0.9385
					Lus10014954 [exp]	4.9	0.9298
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	5.5	0.9298
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	6.8	0.9364
AT4G12750			Homeodomain-like transcription...		Lus10012302 [exp]	7.1	0.9139
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	10.4	0.9205
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10034070 [exp]	12.4	0.8930
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	12.8	0.9317
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10008796 [exp]	13.5	0.9337
					Lus10013097 [exp]	14.3	0.8917

Compare expression of checked genes

Lus10021336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.