Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55300 244 / 3e-83 TAF7 TBP-associated factor 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017011 [exp] 337 / 1e-119 AT1G55300 274 / 1e-94 TBP-associated factor 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006300 [exp] 232 / 3e-78 AT1G55300 247 / 5e-84 TBP-associated factor 7 (.1.2) Potri.003G218700 [exp] 224 / 3e-75 AT1G55300 244 / 7e-83 TBP-associated factor 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF04658 [flax] [poplar] TAFII55_N TAFII55 protein conserved region
Representative CDS sequence Show only first row Show all	>Lus10021337 pacid=23178173 polypeptide=Lus10021337 locus=Lus10021337.g ID=Lus10021337.BGIv1.0 annot-version=v1.0 ATGGAGGAACAATTCATTCTCAGAGTCCCGCCTTCCGTTGCTGAGACTATCGAAAGCCTTCTGAATGGAAGTGCATCTACTTCTGAAGAACAGTCGCTGG ATTTGTCTTTCTCTGAGGATGGAAGGAGTGGCACATTTTCTGTTGGCAATGAGCAGTTTCCTGCATCTCTCTTGGATCTGCCTTGTGTTATAGAGTCCTT CAAAACATATGATGACGCTGCTCTGGTTAAAACTGCAGACATTGGCCAGATGATTATGGTTAGAGGACCCAACGATTCTGCTCCAGATACAACTGAGTCC AGACATGGGATCACTCCTCCCATGAGGGATGCTAGGAAAAGAAGATTCCGGAGAGAACCTGACCTAAATCCTGAGCTTGTACAACGTGTGGAGAGAGATC TATTGAACATCATGACTCCAAACGAGCAAGAAGATGGCAATCAGCATGCAAGTATTGCCAATAAGAAAACTGCACCCAAGCCCGTGTCAAAGCCTGAGGC TCCACCGGCAAAAACCAATGTTGAGGAGCCTGAGCGAAGCGACTCCGACGAATCTGAGGATTCAATGTAA
AA sequence Show only first row Show all	>Lus10021337 pacid=23178173 polypeptide=Lus10021337 locus=Lus10021337.g ID=Lus10021337.BGIv1.0 annot-version=v1.0 MEEQFILRVPPSVAETIESLLNGSASTSEEQSLDLSFSEDGRSGTFSVGNEQFPASLLDLPCVIESFKTYDDAALVKTADIGQMIMVRGPNDSAPDTTES RHGITPPMRDARKRRFRREPDLNPELVQRVERDLLNIMTPNEQEDGNQHASIANKKTAPKPVSKPEAPPAKTNVEEPERSDSDESEDSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	0	1
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	2.2	0.8929
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	2.8	0.8732
AT5G57910			unknown protein		Lus10022161 [exp]	3.5	0.8676
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Lus10006936 [exp]	4.2	0.8757
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	4.5	0.8683
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	4.9	0.8866
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10005771 [exp]	7.3	0.8506
AT2G46090			Diacylglycerol kinase family p...		Lus10036388 [exp]	8.4	0.8529
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003521 [exp]	8.9	0.8471
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	11.0	0.8467

Compare expression of checked genes

Lus10021337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.