Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36200 1452 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 861 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 853 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37420 730 / 0 ATP binding microtubule motor family protein (.1) AT3G17360 242 / 2e-65 POK1 phragmoplast orienting kinesin 1 (.1) AT1G59540 236 / 4e-65 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 239 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 237 / 1e-64 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G12020 235 / 3e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G44050 233 / 8e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017016 [exp] 1874 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 1697 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 842 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 842 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 700 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 693 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10009073 [exp] 662 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 630 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10022694 [exp] 540 / 0 AT2G36200 394 / 3e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077800 [exp] 1562 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 1546 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 849 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 829 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 723 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G082400 [exp] 697 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 248 / 6e-68 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 241 / 2e-65 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 236 / 1e-63 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.002G123500 [exp] 232 / 6e-63 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10021340 pacid=23178249 polypeptide=Lus10021340 locus=Lus10021340.g ID=Lus10021340.BGIv1.0 annot-version=v1.0 ATGTCTGGCCGCCACGAGAAAGAGAAGGGCGTTAATGTTCAGGTGCTGCTTCGTTGCAGGCCGTTTAGTGATGACGAGTTGAGGAACCATGCGCCACAGG TGGTCACTTGCAATGACTACCAGAGGGAAGTGGCCGTCTCACAGAATATCGCCGGGAAACAAATCGATCGAGTTTTCACATTCGACAAGGTCTTTGGTCC TACAGCGCAGCAAAGAGACCTCTATGAACAAGCAGTAGTACCGATCGTACATGAAGTTTTGGAAGGATTCAATTGTACCATTTTTGCATATGGTCAAACG GGTACTGGAAAAACGTATACAATGGAAGGAGAATGCAAGAGAGCAAAGAGTGGTCCTAATGGAGAACTACCTCAAGAAGCGGGAGTTATTCCTAGAGCCG TCAAGCAGATATTTGATACGCTCGAAGGCCAGAATGCTGAATACAGTGTCAAAGTTACTTTCTTGGAGTTGTACAATGAGGAAATCACTGATTTGCTTGC CCCAGAAGAAATTTCTAAGATAGCTGTAGATGAAAAGCAAAAGAAGCAGCTGCCGCTTATGGAGGATGGGAAGGGCGGAGTCCTCGTTAGAGGTCTTGAG GAAGAAATAGTGGCAAGCGCCAGTGAGATATTCACTCTCCTCGAGAGAGGTTCGGCAAAACGTCGAACAGCTGAGACTTTGTTAAACAAGCAATCCAGTC GTTCGCATTCTCTCTTTTCCATTACAATCCACATCAAAGAAGCCACTCCAGAAGGCGAGGAACTAATCAAGTGTGGGAAATTGAATCTGGTCGATCTGGC TGGCTCAGAAAATATATCTCGTTCTGGTGCTAGGGAGGGCCGTGCAAGAGAAGCTGGTGAAATCAACAAAAGCTTGCTTACACTGGGTAGAGTGATTAAT GCTCTTGTGGAGCATCTTGGCCATATTCCATACAGGGATAGCAAACTCACTCGATTACTTCGAGATTCTCTCGGAGGAAGAACCAAAACCTGTATCATAG CTACTGTTTCCCCAGCTGTACATTGCTTGGAGGAGACATTGAGTACGCTTGATTATGCACACCGTGCCAAGCATATAAGGAATAAGCCTGAGGTGAACCA AAAAATGATGAAATCAACCCTTATCAAAGATCTATATGGTGAAATCGATAGACTGAAGGCAGAGGTTTATGCAACACGTGAAAAGAACGGTGTATATATT CCGAAGGAACGATACTATCAGGAGGAAGCTGAAAGGAAGGCCATGGCTGATCAAATAGAACAAATGGGGGTCACGATAGAAACTCACCAGAAGCAATTTG AGGAATTACAAGAGAGATATCATATGCAAGTTAGGCACTGTAACGATTTAAGTAGCAAACTCGCACATACGGAGAAAAACTTGCATGAAACAAGCAAATT GCTTGCTAACACCGAGGAAGAACTGAAAAAGTGTCGCTATGCATTGAACGAAAGGGATTTTGTCATATCTGAACAGAGAAAAGCTGAAAGCGCTTTGACT CAGCAGGCATGTGTGTTGCGGTCTGATTTAGAAAAAGCTCTGAAAGACAACGCTTCTTTGTTCGAAAAGATTGGTAGAGAAGATAAACTGCAATCTGAGA ATAGATCATTGGTCGATAGATTCCAGGCTGAGCTCTCTCAACAGATAGGTTGTCTGCGTAGCATAGTTTCAAAATCTACGTCTCAGCAAGATGAGCATCT GCAGTGTGCTGGTAACCTGTGCCATTCTTTTCTGCAGACGCATGATAAGGCTGTTAAAGATATGAAGAAGAAACTGAAAAATACAAGGGTGCTCTTCACT TCTCACATTGAAGCTTTGCAAAATGTGGTTCGCTTGCACAAGGCGAGTTCTACTGCTGGCCTGGAAGAGATCTCAACTTTGGCTTCTTCTGATGCAAAGT CTATTGAAGATTATTTAGCTTCAGAGGGTGTTGAAGCGGCTTCAATATTCGATGATCTTGGGAATGCTCTTTCAACCAACCAAGGAGAAATGGCTGTTTT TGCAGGCGAGCTTCGTCAGAGATTCAATTCAAGTTGTGATCAAACAAAACAAATCTCAGATTACACAGATGGATTCCTTAGTAAACTTCTGCAACAGTCC AAAACTCTCCGAAATCATGTGATAGAAGCTGACAACTTCCAAATAAATAGTATTGCTGATTTCCAGAAAGCTTACGAGGAACAATCAAAATCTGATGCCG AGAAGCTTGTTGCCGATATAAGCAATCTTGTTTCTCATCACATTCTACGGCAAAAAGAGCTGGTGAATGCAAGGCTTGATGGGTTTAGAGAAGCTGCTGT TGGAAGCAAGACGTTTTTGGACGGACAAGTTTCTTCACTAGACAGTATGACCACTGAAGCAAAACGGAAATGGCAAGAATATTGTGTGCAAGCGGAGAGT GATGCTAAGGATGGTACAGATTATTCAGTTGCGAAACACTGTCGTATGGAGATCCTCCTGCAGCAAAGTGTAAGCAATGCCGAAACAGCTTTCCAGCACT GCAAAAAGACCCGTGAATCTGTGAACGACATGTGCTCAAAGCATGTCTCATCTTTGGCAACGCTTGTCAGTGATGCATGTGATAGCCATGAACAACATGA TGCTGAAATCGAGTCTGCGAGGACGGCAGCAGAACAGGACGTATCGACAAATATTCAAGACGTTCTTCAGCACATCGATGGTATGTCAGCACAAGAACAG AAAACTGTTTCTGGTGTGTTGACAATTGTCGAAGAACACACGAAAACCATAGAAACTTTCCGCGAGGATCACTCCTCCCAATCGTCAATTATGGAGAACA AATCACAGGAAACCTTCCTGCAGCGCTTTATGGATTATGAGCCGACTGGAGAAACTCCAATGAGGACAGAACCGGAAGTACCAAGCAAGGGCACAATCGA GTCGTTGCGAGCAATGCCGATGGAGGCATTGGTGGATGAATACCGAGAGAACAACTCGTACGAGACGTTTGAGGTGAAGGAACTGAAACCATCTCTGATC CCACGCCCTCCCTTTGCCCAAATCAACTAG
AA sequence Show only first row Show all	>Lus10021340 pacid=23178249 polypeptide=Lus10021340 locus=Lus10021340.g ID=Lus10021340.BGIv1.0 annot-version=v1.0 MSGRHEKEKGVNVQVLLRCRPFSDDELRNHAPQVVTCNDYQREVAVSQNIAGKQIDRVFTFDKVFGPTAQQRDLYEQAVVPIVHEVLEGFNCTIFAYGQT GTGKTYTMEGECKRAKSGPNGELPQEAGVIPRAVKQIFDTLEGQNAEYSVKVTFLELYNEEITDLLAPEEISKIAVDEKQKKQLPLMEDGKGGVLVRGLE EEIVASASEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVIN ALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKHIRNKPEVNQKMMKSTLIKDLYGEIDRLKAEVYATREKNGVYI PKERYYQEEAERKAMADQIEQMGVTIETHQKQFEELQERYHMQVRHCNDLSSKLAHTEKNLHETSKLLANTEEELKKCRYALNERDFVISEQRKAESALT QQACVLRSDLEKALKDNASLFEKIGREDKLQSENRSLVDRFQAELSQQIGCLRSIVSKSTSQQDEHLQCAGNLCHSFLQTHDKAVKDMKKKLKNTRVLFT SHIEALQNVVRLHKASSTAGLEEISTLASSDAKSIEDYLASEGVEAASIFDDLGNALSTNQGEMAVFAGELRQRFNSSCDQTKQISDYTDGFLSKLLQQS KTLRNHVIEADNFQINSIADFQKAYEEQSKSDAEKLVADISNLVSHHILRQKELVNARLDGFREAAVGSKTFLDGQVSSLDSMTTEAKRKWQEYCVQAES DAKDGTDYSVAKHCRMEILLQQSVSNAETAFQHCKKTRESVNDMCSKHVSSLATLVSDACDSHEQHDAEIESARTAAEQDVSTNIQDVLQHIDGMSAQEQ KTVSGVLTIVEEHTKTIETFREDHSSQSSIMENKSQETFLQRFMDYEPTGETPMRTEPEVPSKGTIESLRAMPMEALVDEYRENNSYETFEVKELKPSLI PRPPFAQIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	0	1
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	1.0	0.9836
AT1G20060			ATP binding microtubule motor ...		Lus10033133 [exp]	2.4	0.9759
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	2.8	0.9778
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10030028 [exp]	3.9	0.9717
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	5.3	0.9748
AT2G36200			P-loop containing nucleoside t...		Lus10017016 [exp]	5.3	0.9664
AT2G37420			ATP binding microtubule motor ...		Lus10025304 [exp]	6.3	0.9687
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10007725 [exp]	6.7	0.9690
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	7.5	0.9691
AT5G48310			unknown protein		Lus10016071 [exp]	7.7	0.9675

Compare expression of checked genes

Lus10021340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.