Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11470 348 / 9e-121 4'-phosphopantetheinyl transferase superfamily (.1.2.3) AT2G02770 283 / 2e-90 4'-phosphopantetheinyl transferase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017021 [exp] 551 / 0 AT3G11470 327 / 1e-111 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10004722 [exp] 62 / 7e-11 AT3G11470 62 / 8e-11 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10008521 [exp] 61 / 4e-10 AT3G11470 62 / 2e-10 4'-phosphopantetheinyl transferase superfamily (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211300 [exp] 400 / 8e-141 AT3G11470 345 / 5e-119 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Potri.016G078400 [exp] 370 / 2e-129 AT3G11470 328 / 8e-113 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Potri.010G238500 [exp] 60 / 3e-10 AT3G11470 56 / 8e-09 4'-phosphopantetheinyl transferase superfamily (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0670 [flax] [poplar] 4PPT PF01648 [flax] [poplar] ACPS 4'-phosphopantetheinyl transferase superfamily
Representative CDS sequence Show only first row Show all	>Lus10021344 pacid=23178225 polypeptide=Lus10021344 locus=Lus10021344.g ID=Lus10021344.BGIv1.0 annot-version=v1.0 ATGAATTCACGATGCTTCTGTTTACCGAGAAGCTTTTCCACCGCTTTGCCCCCCGTCCATCTCCCTTCTCGAATGGAAACGCACCTGTGGTACGTGGTGC CGGATGAGGTGAAGAGTGCTTCTCTGTTGAGTCAATACATGGAGCTTTTGCCGCAGTCAGAGCGAGATCACGTCCTCAGCTTCCGCGGAGATCAACTTCA GAAGAGTGCTTTGCTTGCTCGTACATTAGTGCGCACAACCATTGCAAGATATCAGGTAGACGGTCATCTCGATCCTAGGTCGTTGAGGTTCAAAAGGAAC ATCCATGGGAAACCTGAGGTGGAGTGGCAATCTAAAGATGACTGGTGCTCGCCTCCATTGCATTTCAACATTTCTCATACTCCTTCTTTAGTTGCTTGTG GAGTGGCTGTGAATTCGTCTATTGGCATTGATGTTGAGGAGAAGCAACGAAGGACCAAGCATAGCATCCTAGCATTTGCAAAACGGTATTTCTCTGCTCA TGAAGTCGAACATTTAAACGCAATTCCTGATCTTGAACTTCAGCAGCAGGAGTTTATAAAGTTGTGGACCCTTAAGGAGGCATACGTTAAAGCCTTGGGA AAAGGCTTCTCTTCTGCACCATTCAAGACCTTTACTATCAGGGTTAATACTGCTACCAAAGGAAGCATTTGTCTTCCCGAAACTAATCAGGTATCTGAAA TAGTTGTCGAATCTGTTGATAACCCTACGAATCATACAAACGACTGGCAGTTTGCTGTCTTGGAGCTGATGGGCTCCCATTACGTTGCTATTTGCTTAGA GACGGAGAAAATCAACGGAGGCAGAAATGCAGCTGCAATCAAGTTATCTGCAAGAAGAACCATTCCATTTGTGGAAGACGAGCTTGTTTCTGGAACTAAT GCAGTTGTAACAATCGGAGGCTTTGTCAAACACTGCTAA
AA sequence Show only first row Show all	>Lus10021344 pacid=23178225 polypeptide=Lus10021344 locus=Lus10021344.g ID=Lus10021344.BGIv1.0 annot-version=v1.0 MNSRCFCLPRSFSTALPPVHLPSRMETHLWYVVPDEVKSASLLSQYMELLPQSERDHVLSFRGDQLQKSALLARTLVRTTIARYQVDGHLDPRSLRFKRN IHGKPEVEWQSKDDWCSPPLHFNISHTPSLVACGVAVNSSIGIDVEEKQRRTKHSILAFAKRYFSAHEVEHLNAIPDLELQQQEFIKLWTLKEAYVKALG KGFSSAPFKTFTIRVNTATKGSICLPETNQVSEIVVESVDNPTNHTNDWQFAVLELMGSHYVAICLETEKINGGRNAAAIKLSARRTIPFVEDELVSGTN AVVTIGGFVKHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10021344 [exp]	0	1
AT5G19730			Pectin lyase-like superfamily ...		Lus10012942 [exp]	9.4	0.8889
					Lus10036165 [exp]	14.1	0.8790
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	17.1	0.8881
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	23.2	0.8869
AT2G18410			unknown protein		Lus10028481 [exp]	27.7	0.8766
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	29.6	0.8872
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041975 [exp]	30.6	0.8768
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	33.6	0.8828
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	33.6	0.8824
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	36.0	0.8823

Compare expression of checked genes

Lus10021344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.