Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03940 879 / 0 SRP54CP, CPSRP54, FFC SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) AT1G48900 210 / 5e-61 Signal recognition particle, SRP54 subunit protein (.1.2) AT1G15310 187 / 1e-52 SRP54-1, ATHSRP54A signal recognition particle 54 kDa subunit (.1) AT5G49500 184 / 2e-51 Signal recognition particle, SRP54 subunit protein (.1) AT2G45770 158 / 4e-43 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) AT4G30600 104 / 3e-23 signal recognition particle receptor alpha subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017023 [exp] 1065 / 0 AT5G03940 892 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Lus10016213 [exp] 197 / 5e-56 AT1G48900 890 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10029330 [exp] 185 / 6e-52 AT1G48900 816 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Lus10041358 [exp] 156 / 3e-42 AT2G45770 583 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10036570 [exp] 135 / 2e-34 AT2G45770 564 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Lus10017891 [exp] 114 / 2e-26 AT4G30600 933 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Lus10035066 [exp] 110 / 5e-25 AT4G30600 943 / 0.0 signal recognition particle receptor alpha subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G078600 [exp] 919 / 0 AT5G03940 928 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.006G211500 [exp] 917 / 0 AT5G03940 859 / 0.0 SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, 54 CHLOROPLAST PROTEIN, chloroplast signal recognition particle 54 kDa subunit (.1) Potri.001G253500 [exp] 206 / 1e-59 AT1G48900 882 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.016G112800 [exp] 202 / 7e-58 AT1G48900 887 / 0.0 Signal recognition particle, SRP54 subunit protein (.1.2) Potri.014G078800 [exp] 152 / 4e-41 AT2G45770 593 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.018G105900 [exp] 105 / 8e-24 AT4G30600 856 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.006G183600 [exp] 105 / 2e-23 AT4G30600 869 / 0.0 signal recognition particle receptor alpha subunit family protein (.1) Potri.002G155400 [exp] 92 / 1e-21 AT2G45770 215 / 1e-69 FERRIC CHELATE REDUCTASE DEFECTIVE 4, signal recognition particle receptor protein, chloroplast (FTSY) (.1), signal recognition particle receptor protein, chloroplast (FTSY) (.2) Potri.009G047902 [exp] 85 / 2e-17 AT1G48900 487 / 7e-171 Signal recognition particle, SRP54 subunit protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00448 [flax] [poplar] SRP54 SRP54-type protein, GTPase domain CL0123 [flax] [poplar] HTH PF02978 [flax] [poplar] SRP_SPB Signal peptide binding domain CL0123 [flax] [poplar] PF02881 [flax] [poplar] SRP54_N SRP54-type protein, helical bundle domain
Representative CDS sequence Show only first row Show all	>Lus10021346 pacid=23178288 polypeptide=Lus10021346 locus=Lus10021346.g ID=Lus10021346.BGIv1.0 annot-version=v1.0 ATGGATTTCCAGCTGATAGATAATAAAAAGAAACTCAGCGCAGACATCAGCTTGATATCGTTGGCAATGGAGGCCGTACAGTTCTCGACCGTTGCCTCCC GCTGTTTTGCTTCAAATTCATTACCCAGGAGCTCCAAAAGCTACGCCAGCAGTAAATGTGCGAGGAATCCGGCTCAGGCAGTTCGTTCTTCATGGAGCGG ATCAAGCAGCGTCGCTTCTCTTTCGTCCAGAAATCCGTTCACTAGACAACTGCGGGGTTGGCTGAATGGCAGGAGAGTTTCCCGGACAAGAGATACACGT AGCGTCGTGAGAGCAGAGATGTTCGGACAGTTGACGAGCGGGCTTGAAACTGCGTGGAACAAGCTCAAAGGAGCAGAGGTTTTGACCAAGGATAATATTG AGGAGCCTATGAGGGATATTAGGAGAGCTCTTCTGGAAGCTGATGTAAGCCTTCCGGTTGTTAGAAGATTTGTTCAGTCAGTTAGCGAGGAAGCTGTTGG GGTAGGGCTGATAAGAGGAGTGAGACCTGATCAACAGTTGGTCAAGATTGTACGTGACGAGCTTGTGAAATTAATGGGAGGAGAGGTTTCTGAACTGGTT TTTGCAAAATCAAGCCCTACAGTCATATTACTGGCTGGTTTACAAGGAGTTGGGAAGACAACCGTCTGCGCAAAGCTAGCAAACTATCTCAAGAAACAGG GAAAGAGTTGCATGCTTGTAGCTGGAGATGTGTACAGACCTGCTGCTATTGACCAACTTGTCATTTTGGGCGAACAGGTGGGTGCTCCTGTTTACACGGA GGGGACTGATGTTAAGCCATCCGAAATAGCAAAGAGAGGCTTAGCGGAGGCGAAAAAGAAGAAAGTAGATGTTTTAATCGTAGATACTGCTGGAAGGCTT CAGATAGACAAAGGAATGATGGATGAATTGAAGGACGTGAAGAAAGTCTTGAACCCGACAGAGGTCTTGCTTGTTGTAGATGCAATGACTGGCCAAGAAG CTGCAGCATTGGTTACAAGTTTCAATCTTGAAATTGGTATTACGGGTGCCATTTTGACAAAGCTAGATGGAGATTCCAGAGGTGGTGCCGCTCTGAGTGT TAAAGAGGTATCAGGAAAACCAATCAAGCTTGTGGGACGAGGAGAGCGGATGGAGGACTTGGAACCTTTCTACCCAGATCGTATGGCTGGACGTATCTTA GGAATGGGAGATGTTCTCTCATTCGTGGAGAAAGCACAAGAAGTTATGAAACAAGAAGATGCCGAAGACCTTCAGAAGAAGATAATGAGTGCAAAATTCG ACTTCAATGATTTTCTGAAGCAAACTCGTGCGGTTGCACGCATGGGTTCCATGACTCGTGTCCTTGGCATGATCCCAGGGATGGGAAAGGTAACTCCCGC ACAAATTCGTGATGCTGAGAAGAGTCTTAAGATTATGGAAGCTATGATTGATGTAATGTCACCAGAGGAAAGAGAGAAGCCCGAATTGTTGGCCGAGTCA CCAGTTAGAAGAAGAAGAATTGCCCAAGAATCTGGGAAGACGGAACAGCAGGTGAGTCAACTTGTTGCTCAACTGTTCCAAATGCGTGTCCGGATGAAGA ATCTAATGGGCGCTATGGAGGGTGGATCGATTCCTGCTCTGAGCGATCTAGAGGATTCCCTCAAGGCTGAACAGAAGGCTCCTCCTGGTACTGCAAGAAG GAAGAAAAGAGCAGAGTCCAGGAAGCAATTTCAAGGCTCAACATCTCAAAGACCTAGTCCTCGTGGTTTCGGTTCAAGCAATTAG
AA sequence Show only first row Show all	>Lus10021346 pacid=23178288 polypeptide=Lus10021346 locus=Lus10021346.g ID=Lus10021346.BGIv1.0 annot-version=v1.0 MDFQLIDNKKKLSADISLISLAMEAVQFSTVASRCFASNSLPRSSKSYASSKCARNPAQAVRSSWSGSSSVASLSSRNPFTRQLRGWLNGRRVSRTRDTR SVVRAEMFGQLTSGLETAWNKLKGAEVLTKDNIEEPMRDIRRALLEADVSLPVVRRFVQSVSEEAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELV FAKSSPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLVILGEQVGAPVYTEGTDVKPSEIAKRGLAEAKKKKVDVLIVDTAGRL QIDKGMMDELKDVKKVLNPTEVLLVVDAMTGQEAAALVTSFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRIL GMGDVLSFVEKAQEVMKQEDAEDLQKKIMSAKFDFNDFLKQTRAVARMGSMTRVLGMIPGMGKVTPAQIRDAEKSLKIMEAMIDVMSPEEREKPELLAES PVRRRRIAQESGKTEQQVSQLVAQLFQMRVRMKNLMGAMEGGSIPALSDLEDSLKAEQKAPPGTARRKKRAESRKQFQGSTSQRPSPRGFGSSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	0	1
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	1.7	0.9550
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10012268 [exp]	2.2	0.9441
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	3.7	0.9489
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	5.3	0.9460
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	5.5	0.9474
AT1G14030			Rubisco methyltransferase fami...		Lus10036780 [exp]	5.5	0.9400
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025769 [exp]	5.7	0.9234
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	6.7	0.9401
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	6.9	0.9440
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10017023 [exp]	7.1	0.9339

Compare expression of checked genes

Lus10021346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.