Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03910 379 / 2e-124 ABCB29, ATATH12 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) AT3G28345 74 / 2e-13 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28415 72 / 5e-13 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28360 72 / 6e-13 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28390 70 / 3e-12 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28860 69 / 6e-12 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G10680 68 / 1e-11 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G70610 68 / 1e-11 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT1G28010 67 / 4e-11 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT4G25960 66 / 4e-11 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017024 [exp] 771 / 0 AT5G03910 712 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Lus10043069 [exp] 78 / 9e-15 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10015595 [exp] 75 / 1e-13 AT3G28860 971 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10032911 [exp] 74 / 1e-13 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10036616 [exp] 71 / 8e-13 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 72 / 1e-12 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10004571 [exp] 71 / 1e-12 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10017271 [exp] 70 / 4e-12 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10000910 [exp] 69 / 5e-12 AT4G25960 808 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211700 [exp] 499 / 8e-171 AT5G03910 709 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Potri.015G059700 [exp] 80 / 2e-15 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.011G133800 [exp] 79 / 3e-15 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G059800 [exp] 76 / 3e-14 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.002G019600 [exp] 76 / 3e-14 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G417600 [exp] 75 / 9e-14 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 74 / 2e-13 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 74 / 2e-13 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 74 / 2e-13 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G051800 [exp] 69 / 3e-12 AT5G39040 627 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10021348 pacid=23178192 polypeptide=Lus10021348 locus=Lus10021348.g ID=Lus10021348.BGIv1.0 annot-version=v1.0 ATGGCGCTTCCGCTTCGTCTTCAGGTTCAGCTCAATCCTTCTGCTCCTCGACCTCGACTCCCTTCCTTCACTCTACGCCTACCGAAGCTTCTCCACTTAT CACCTACCAGTCTCCAACCACCGACACTTCTTCCTTCTCATTATAAACACCTCAATTCCGGCCGTCTCCGACCTCTCCACGCCGCCGCTGAACGATTACT CTCCCGCGACGATGATTCACTCTCCCGCACGCTCCGATCTTTCTCCCTGATCAAACCCTACGTTCTCTCCCAGCAGAAGTTCATCCTCCTTGGCTGGCTC TGCAGCCTCCTCTCAGTGGTTTCCCTCTCCCAAGTTGTGTCCCGGTTCGGAAGGTTCTCTTCCTGCATCGGTAAGATGGATATGAGGACGATGATCAGCC AAGGTTCGATTCTGGGAGTTTTCTTCTTGGCTAAGCTGATTGCCACTTACCTGCAACAGGCGATGTTGTGGGAGGCTTCGTTGAAAGCGGTTTGTGATAT GAGAGGTGATGTCTTCCGAGGGGTTCTGGGGAGGGAATTAGGTTATTTTGAAGGAGGAAGCGGTGTCTCTTCCGGAGATATTGCTCATAGGATCACGGAC GAGGCTGAGGATGTTGCTGACACGCTCTTTGCGCTTCTCAATACCATTGTGCCCGGTGCTATGCAGCTATCAGCAATGGCTACGCAGATGTTGGTCATAA GTCCTGCCCTTTCCACAATTTCAGCCATGGTTGTTCCCTGTACATCTCTTGCCATTGCTTACCTTGGTGAAAGGATGCGGAAGATATCCAAGGATGCACA CGTTAGTGTTGCTAATGTCTCCGCATACCTCAATGAGGTAGTCCCAGCAATTCTCTTTGTAAAGGCAAACAATGCAGAACTATGTGAGAGTGTCAGGTTC CAGAGGCTTGCTGATGCTGACCTATTGGCACATCTTAAAAAGAAGAAAATGAAGGCACTCACCCCCCAGATCATACAGATAATATATTTTGGAGGGTTGT TTACCCTTTGTGTTGGATCACTTGTATTCTCAAAGGGCTGTTTTGATAGCTGCAATGTCGTTTCTTTCATGACATCACTGATATTCTTGCTCGAGCCGAT CCAGGATTTTGGGAAAGCATTCAATGAGTGGAAGCAAGGAGAACCTGGGATAGAGCGATTATTTGATTTGGCTAACTACAAATCTAAGGTTAACGAGTGC CCTAGTCAGCTATACCTTGCTGTTGTGGTTGACAAACAGGATGTCATTGAGTTGAAGTCCGTGAAGGGAGATGTCAAATTTTATGATGTTTCATTCCAAT ATGGGGACAATAGGCCTCTCGTACTGAATAAACTTAACCTTCACATCCAAGCTGGTGAAACTGTTGCACTAATTGGGCCATCTGGAGGTGGGAAGACGAC CCTTGTGAAATTGCTTCTGCGGCTTTATGATCCTTTATCTGGTGGAGTCCTCCTAGATAACAGAAATATCCAGAACATACATTTGGAGAGTCTGAGGAGG CATGTTGGTCTGGTTTCTCAGGATACCGTGAGCGACTCTAAACTCCCTTTTATTATTGACATTCATTACTTTTCTGTCAATATAATTGGATACGATTTCG AGCCAATAATATGGACATATCCGACTATTGTACGTTGTGGCAGCCATTGGTTTACTTGGATGCTGTTTGAGTTGGTTATATGTCCTGACTCCTGA
AA sequence Show only first row Show all	>Lus10021348 pacid=23178192 polypeptide=Lus10021348 locus=Lus10021348.g ID=Lus10021348.BGIv1.0 annot-version=v1.0 MALPLRLQVQLNPSAPRPRLPSFTLRLPKLLHLSPTSLQPPTLLPSHYKHLNSGRLRPLHAAAERLLSRDDDSLSRTLRSFSLIKPYVLSQQKFILLGWL CSLLSVVSLSQVVSRFGRFSSCIGKMDMRTMISQGSILGVFFLAKLIATYLQQAMLWEASLKAVCDMRGDVFRGVLGRELGYFEGGSGVSSGDIAHRITD EAEDVADTLFALLNTIVPGAMQLSAMATQMLVISPALSTISAMVVPCTSLAIAYLGERMRKISKDAHVSVANVSAYLNEVVPAILFVKANNAELCESVRF QRLADADLLAHLKKKKMKALTPQIIQIIYFGGLFTLCVGSLVFSKGCFDSCNVVSFMTSLIFLLEPIQDFGKAFNEWKQGEPGIERLFDLANYKSKVNEC PSQLYLAVVVDKQDVIELKSVKGDVKFYDVSFQYGDNRPLVLNKLNLHIQAGETVALIGPSGGGKTTLVKLLLRLYDPLSGGVLLDNRNIQNIHLESLRR HVGLVSQDTVSDSKLPFIIDIHYFSVNIIGYDFEPIIWTYPTIVRCGSHWFTWMLFELVICPDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021348 [exp]	0	1
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021349 [exp]	2.4	0.8319
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012161 [exp]	8.6	0.8393
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	11.2	0.8379
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	17.0	0.7818
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	18.2	0.7699
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Lus10005106 [exp]	21.2	0.8272
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10035846 [exp]	22.2	0.8174
AT5G50100			Putative thiol-disulphide oxid...		Lus10004232 [exp]	25.9	0.7939
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	27.1	0.7985
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	31.4	0.7973

Compare expression of checked genes

Lus10021348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.