Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03910 184 / 4e-56 ABCB29, ATATH12 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) AT1G28010 124 / 6e-34 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G27940 124 / 9e-34 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT2G36910 121 / 9e-33 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 119 / 4e-32 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT5G46540 117 / 1e-31 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G28390 117 / 3e-31 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT4G01830 117 / 3e-31 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT3G28860 116 / 3e-31 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT3G28415 116 / 3e-31 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017024 [exp] 253 / 6e-82 AT5G03910 712 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Lus10023929 [exp] 122 / 4e-33 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10032911 [exp] 121 / 8e-33 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10039458 [exp] 120 / 1e-32 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10015595 [exp] 120 / 1e-32 AT3G28860 971 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10004571 [exp] 119 / 3e-32 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10005839 [exp] 119 / 3e-32 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10000910 [exp] 119 / 3e-32 AT4G25960 808 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10020905 [exp] 119 / 7e-32 AT3G28860 988 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211700 [exp] 188 / 2e-57 AT5G03910 709 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Potri.018G141300 [exp] 122 / 4e-33 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.003G094400 [exp] 122 / 4e-33 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.016G093600 [exp] 121 / 7e-33 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 120 / 2e-32 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G139600 [exp] 118 / 6e-32 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.006G074400 [exp] 118 / 8e-32 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G136700 [exp] 118 / 8e-32 AT4G25450 953 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) Potri.002G019600 [exp] 118 / 9e-32 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G139700 [exp] 117 / 1e-31 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10021349 pacid=23178291 polypeptide=Lus10021349 locus=Lus10021349.g ID=Lus10021349.BGIv1.0 annot-version=v1.0 ATGGCTGCACGAAATGCAAATGCAGATGAATTCATTAAGATGCTTCCTAAGGGATATGAAACAAGTGTTGGACCAAGGGGCTCAAGCTTGAGTGGAGGCC AAAAGCAAAGGCTCGCTATCGCAAGGGCCATCTATCAGGATGCTGCTATATTGATCTTGGATGAGGCAACTTCTGCCTTGGACAGCAAGTCTGAGTTGCT GGTGAGACAAGCTCTGGAGCGGCTAACAAAAAATCACACGGTGCTGGTGATTGCCCACCGGCTGGAGACCGTCCTGATGGCGAACCGAATATTGCTTCTT GATAAAGGGGAGCTTCGGGAGATTAGTCGATCGAGTATTCTGAATGAACACCAAACCTACATGGCGTCGAACGAGATCGTTATCTGA
AA sequence Show only first row Show all	>Lus10021349 pacid=23178291 polypeptide=Lus10021349 locus=Lus10021349.g ID=Lus10021349.BGIv1.0 annot-version=v1.0 MAARNANADEFIKMLPKGYETSVGPRGSSLSGGQKQRLAIARAIYQDAAILILDEATSALDSKSELLVRQALERLTKNHTVLVIAHRLETVLMANRILLL DKGELREISRSSILNEHQTYMASNEIVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021349 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	1.4	0.8560
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021348 [exp]	2.4	0.8319
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10040482 [exp]	4.2	0.8140
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10029053 [exp]	12.9	0.7605
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	13.4	0.7779
AT3G57450			unknown protein		Lus10019730 [exp]	16.4	0.7456
AT2G04790			unknown protein		Lus10012354 [exp]	26.6	0.7986
AT1G75100		JAC1	J-domain protein required for ...		Lus10032709 [exp]	29.9	0.7824
AT2G36895			unknown protein		Lus10001393 [exp]	30.8	0.7389
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	31.4	0.8078

Compare expression of checked genes

Lus10021349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.