Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07390 349 / 4e-123 Mannose-P-dolichol utilization defect 1 protein (.1) AT5G59470 329 / 3e-115 Mannose-P-dolichol utilization defect 1 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017025 [exp] 455 / 6e-165 AT4G07390 369 / 3e-131 Mannose-P-dolichol utilization defect 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G023800 [exp] 370 / 2e-131 AT4G07390 337 / 1e-118 Mannose-P-dolichol utilization defect 1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF04193 [flax] [poplar] PQ-loop PQ loop repeat
Representative CDS sequence Show only first row Show all	>Lus10021350 pacid=23178211 polypeptide=Lus10021350 locus=Lus10021350.g ID=Lus10021350.BGIv1.0 annot-version=v1.0 ATGGAGTATCTGGGCATAGATTTTGGTTGTGCAATCGGATCTCTACGCCATGGCAACTTCCCTGAAAAGGATTGTTTGCTTCCTCTTATCTCCAAGCTCC TCGGCTACGCCATCGTCGCTGCTTCCACTACTGTCAAACTCCCTCAGATATTGAAAATTGTGAAGAACAGAAGTGTGAGAGGGCTAAGTGTCGTTGCCTT CGAGTTAGAAGTGATTGGATATACAATTGCACTCGCATATTGTCTTCATAAAGGGTTACCATTTTCAGCTTATGGAGAATATGCGTTTCTCCTCATCCAA GCTATAATCTTAGTTGCTGTTATCTACTACTTTTCACAACCTATCGGCACCAAGACATGGATCAAGGCATTATTATTTTCTGCGATAGCACCAACTATTC TAGCTGGTCAAATTGCTCCCATGCTTTTTGAAGCTCTATATGCATCACAACATGCAATATTCCTCTGTGCCAGAATTCCACAAATATGGGCTAACTTTTC GAACAAAAGCACTGGGGAGCTAAGCTTCTTAACCTTTTTCATGAACTTTGGTGGTTCCATGGTGCGAGTATTCACCAGCCTACAGGAAAAAGCACCTACG AGCGTTGTTCTTGGTTCGGCACTTGGCGTGGTCATGAATGGAACCATCTTGAGTCAAATACTTATGTATCAAAAGAAGCCACAACCCAAAAGAGGCAAGA AAGAAGAATAG
AA sequence Show only first row Show all	>Lus10021350 pacid=23178211 polypeptide=Lus10021350 locus=Lus10021350.g ID=Lus10021350.BGIv1.0 annot-version=v1.0 MEYLGIDFGCAIGSLRHGNFPEKDCLLPLISKLLGYAIVAASTTVKLPQILKIVKNRSVRGLSVVAFELEVIGYTIALAYCLHKGLPFSAYGEYAFLLIQ AIILVAVIYYFSQPIGTKTWIKALLFSAIAPTILAGQIAPMLFEALYASQHAIFLCARIPQIWANFSNKSTGELSFLTFFMNFGGSMVRVFTSLQEKAPT SVVLGSALGVVMNGTILSQILMYQKKPQPKRGKKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G07390			Mannose-P-dolichol utilization...		Lus10021350 [exp]	0	1
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10022524 [exp]	2.0	0.8912
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	2.4	0.8868
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	5.5	0.8659
AT2G25070			Protein phosphatase 2C family ...		Lus10026253 [exp]	10.5	0.8466
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	11.3	0.8667
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	15.3	0.8269
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	15.7	0.8660
AT4G16710			glycosyltransferase family pro...		Lus10028587 [exp]	16.5	0.8207
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	17.0	0.8243
AT4G37030			unknown protein		Lus10011021 [exp]	17.0	0.8578

Compare expression of checked genes

Lus10021350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.