Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52660 450 / 2e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G00830 379 / 4e-127 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G28390 161 / 3e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G44710 129 / 9e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 80 / 6e-16 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G19610 79 / 2e-15 nucleotide binding;nucleic acid binding;RNA binding (.1) AT1G71770 77 / 7e-15 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G34110 76 / 2e-14 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G23350 73 / 2e-13 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G16380 71 / 1e-12 PAB6 poly(A) binding protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034195 [exp] 467 / 2e-162 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043390 [exp] 464 / 3e-161 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030207 [exp] 389 / 2e-131 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10002689 [exp] 382 / 1e-128 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10017026 [exp] 343 / 3e-114 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10028162 [exp] 132 / 9e-33 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033990 [exp] 128 / 3e-31 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 122 / 2e-29 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002835 [exp] 81 / 5e-16 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G212400 [exp] 565 / 0 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 551 / 0 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 473 / 3e-164 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 473 / 5e-164 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G104500 [exp] 387 / 1e-130 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G178200 [exp] 384 / 2e-129 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.005G116400 [exp] 141 / 8e-36 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 138 / 1e-34 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 136 / 4e-34 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 133 / 6e-33 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10021351 pacid=23178239 polypeptide=Lus10021351 locus=Lus10021351.g ID=Lus10021351.BGIv1.0 annot-version=v1.0 ATGCCGAGGGCAAGGGGCAATGCTACAGATGCTGACAGGCATGATGAATGTGAAAGTTCTGTGGATTCTGAGCCTGAAGAACAGGTAGATCTTGATGGTG ACAATGACACTGAGGAGCAGATGGAAGAGGAGATTGAATATGAGGAAGTAGAGGAGGAGGTTGAAGAGGATGAAGAGGAGGAAGAGGTGGAAGAGGAGGT GGAAGAAGATGATGAGGAGACTGTTAATGAGGAAGAGGGAGATGAGGAAAGGAAGCATGCTGAACTTCTGGCACTGCCTCCTCATGGATCAGAGGTTTAT GTTGGAGGCATTCCCCACAATGTTTCGGAAAATGATTTGAGACGTTTTTGTGAATCTGTTGGGGAGGTTACAGAGGTGAGGATAATGAAAGGAAAGGAGT CAGGTGAAGGCAAGGGTTATGCATTTGTCACTTTCAGAACAAAGGAATTGGCTACTAGAGCCATGAAAGATCTAAACAATTCTGACTTCAAGGGTAAAAA GGTTAAGTGCTCTGCATCTCAAGTAAACCATAGATTGTTTATCGGTAATGTACCAAGAATTTGGGGAGAGGAAGATATGAAGAAGGTCGTAAGGAAGATA GGACCTGGAGTTATTTCTGTGGACATGTTAAAGGATCCGCACAACCCTAGTCGAAATCGTGGATTTGCTTTTATCGAGTACTATAATCATGCATGTGCAG AGTACTCGAGAAAAGAAATGTCAAACCCCGAGTTTAAACTGGATGAGAATTCTCCAACAGTGAGTTGGGCCGATCCAAAAAATGCAGGAAATTCTGCACC ATCCCAGGTATGTGGTATTGACAGATATGCAACAGTTAAGGCTATTTATGTGAAGAACTTGCCCAAAGATATTACTCAGGATCAACTGAAGCAGCTGTTT GAACATCATGGAAAAGTCACCAAAGTAGTTCTCCCTCCTGCAAAACCAGGACATGAGAGGAGCAGATTTGGGTTCGTGCACTTCTCAGAGCGGTCAAGTG CCATGAAAGCACTGAAAAACACTGAGAAATATGAAATTGATGGTCGAGTCCTGGACTGTTCCTTGGCGAAACCTCAAGCAGATAATAAGTCAGTTGGAGG AACTAGTTCTCAGAAGCCAGCCATCACTACTACAAGCTTCCCCCCACGCCTCGGTTATGGATTAGTTGGAAATCCTTATGCTGCTCTGGGTGGATTCGGT GCTGCAGGCTTTCCGCAACCTATGTTTTACGGAGCAGAACCGACCCCAGCCGGTATGGCTATGATGCCGATGTTTTTACCCGATGGAAGGGTAGGATACG TCCTACAGCAGCCAGCTGGGATTCAGCCACATATCCCAACTCCGCAACCTCGTGGGGGTAGGGGTGGGGGTAGTTTGAGTAGCTCCAGCAGGGGAAAGCG TTATAGCGATGGTAGTCATCGTGGACGAGGACGAGGACGTTATAATCCGTATTGA
AA sequence Show only first row Show all	>Lus10021351 pacid=23178239 polypeptide=Lus10021351 locus=Lus10021351.g ID=Lus10021351.BGIv1.0 annot-version=v1.0 MPRARGNATDADRHDECESSVDSEPEEQVDLDGDNDTEEQMEEEIEYEEVEEEVEEDEEEEEVEEEVEEDDEETVNEEEGDEERKHAELLALPPHGSEVY VGGIPHNVSENDLRRFCESVGEVTEVRIMKGKESGEGKGYAFVTFRTKELATRAMKDLNNSDFKGKKVKCSASQVNHRLFIGNVPRIWGEEDMKKVVRKI GPGVISVDMLKDPHNPSRNRGFAFIEYYNHACAEYSRKEMSNPEFKLDENSPTVSWADPKNAGNSAPSQVCGIDRYATVKAIYVKNLPKDITQDQLKQLF EHHGKVTKVVLPPAKPGHERSRFGFVHFSERSSAMKALKNTEKYEIDGRVLDCSLAKPQADNKSVGGTSSQKPAITTTSFPPRLGYGLVGNPYAALGGFG AAGFPQPMFYGAEPTPAGMAMMPMFLPDGRVGYVLQQPAGIQPHIPTPQPRGGRGGGSLSSSSRGKRYSDGSHRGRGRGRYNPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10021351 [exp]	0	1
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	4.0	0.8345
AT4G24900			unknown protein		Lus10022913 [exp]	5.7	0.8098
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	6.3	0.8268
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	9.1	0.8355
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	10.7	0.8260
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	11.7	0.8272
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10004024 [exp]	12.8	0.7737
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	14.7	0.8221
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	18.2	0.8294
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10015090 [exp]	19.0	0.8160

Compare expression of checked genes

Lus10021351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.