Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 291 / 1e-96 F-box family protein (.1) AT3G56470 274 / 1e-89 F-box family protein (.1) AT4G00893 270 / 2e-87 unknown protein AT4G12370 231 / 8e-74 unknown protein AT4G10660 227 / 8e-72 CDC68-related (.1) AT1G49360 193 / 7e-57 F-box family protein (.1) AT3G18720 178 / 4e-52 F-box family protein (.1) AT4G10695 167 / 1e-49 CDC68-related (.1) AT4G12382 143 / 1e-41 F-box family protein (.1.2) AT2G44735 105 / 3e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017027 [exp] 731 / 0 AT1G57790 286 / 6e-93 F-box family protein (.1) Lus10022706 [exp] 546 / 0 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10014208 [exp] 538 / 0 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10019204 [exp] 92 / 6e-21 AT1G57790 79 / 2e-16 F-box family protein (.1) Lus10024904 [exp] 84 / 3e-17 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10004476 [exp] 71 / 3e-13 AT1G57790 92 / 4e-20 F-box family protein (.1) Lus10029943 [exp] 71 / 7e-13 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10013738 [exp] 68 / 2e-12 AT1G57790 73 / 3e-14 F-box family protein (.1) Lus10029926 [exp] 53 / 4e-08 AT1G57790 72 / 4e-15 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079300 [exp] 613 / 0 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.006G212600 [exp] 587 / 0 AT1G57790 294 / 2e-97 F-box family protein (.1) Potri.012G106800 [exp] 95 / 3e-21 AT1G57790 99 / 6e-23 F-box family protein (.1) Potri.002G015700 [exp] 47 / 9e-06 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.002G166500 [exp] 44 / 0.0001 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 42 / 0.0006 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.012G106750 [exp] 42 / 0.0007 AT1G57790 57 / 7e-09 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10021352 pacid=23178167 polypeptide=Lus10021352 locus=Lus10021352.g ID=Lus10021352.BGIv1.0 annot-version=v1.0 ATGGGAGTTGAATGCCGTTGTTTGCTGTGTAGGTTAGCTGAAACAGTGTCAAATGATAGAACATTGACAACATCCACAAACAGTAAAGAGAATTCAGAAC TCGAAACTTGGTCCGACCTACCTACAGAACTCCTGGAACTGATTTTTGGCGGCTTATCTTTTCAAGACAATATCCGTGCTTCTGCTGCCTGCAAACGATG GCACATGATTGCTGTTTCTATCAGGGTGGTGAACAAACCCCCCTGGCTCATGTATTTTCCGAAATTCGGTAGCCTGTTTGAATTCTACGATCCAGCACAG CGCAAGACCTATTCCCTCGAGTTATCGGAGTTGTGTGGGTCCAGAGTTTGCTATACCAAAGATGGCTGGTTGCTGCTCTACAGACCTAGAACGCATCGTG TGTTTTTCTTCAACCCGTTCTCTCGAGAAATTGTCAAGCTCCCGAGGTATGAATTGACTTTTCAGATAGTTGCATTCTCTGGTCCTCCAACATCTACCGG CTGTGTAGCGTTCACAGTTAAGCATATAAGTCCTACTGTAGTTGCTATCAGTACTTGCAAGCCCGGTGCAACCGAATGGGTTACTGTTAATTACCAGAAT CGATTGCCTTTCGTTAGTAGTATATGGAATAAGGTTGTTTTCTGCAGTGGACTCTTCTACTGTTTAAGCCTCACAGGGTGGCTAGGTGTTTTCAACCCCG TGGATTGTACTTGGAACGTTCTTGCTGTGCCGCCACCTAAGTGTCCTGAGAACTTCTTTGCTAAGAACTGGTGGAAGGGGAAATTCATGACCGAGCACAA TGGAGAGATTCTGGTGATCTATACTTGCTGCAGCCAGAATCCCATTATATTCAGGCTCGATCAGCCGAATATGGTCTGGGAAGAGATGAAATCACTAGAT GGCTTGACTCTGTTTGCAAGTTTCTTGTCGTCTCAGTCCAGAGTTGACTTGGCAGGCAACATGAGGAACAATGTCTTCTTCTCCAAGGTTCGTTTCTTTG GGAAACGATGCATATCTTATTCACTCGATGATGGTAGATACTATCCTTGCAAGCAGTGCTACGATTGGGGTGAGCAGGATCCCTTTGCGAATATATGGAT CGACCCTCCTGAAGACCTCTCCAGCTTTCTATGA
AA sequence Show only first row Show all	>Lus10021352 pacid=23178167 polypeptide=Lus10021352 locus=Lus10021352.g ID=Lus10021352.BGIv1.0 annot-version=v1.0 MGVECRCLLCRLAETVSNDRTLTTSTNSKENSELETWSDLPTELLELIFGGLSFQDNIRASAACKRWHMIAVSIRVVNKPPWLMYFPKFGSLFEFYDPAQ RKTYSLELSELCGSRVCYTKDGWLLLYRPRTHRVFFFNPFSREIVKLPRYELTFQIVAFSGPPTSTGCVAFTVKHISPTVVAISTCKPGATEWVTVNYQN RLPFVSSIWNKVVFCSGLFYCLSLTGWLGVFNPVDCTWNVLAVPPPKCPENFFAKNWWKGKFMTEHNGEILVIYTCCSQNPIIFRLDQPNMVWEEMKSLD GLTLFASFLSSQSRVDLAGNMRNNVFFSKVRFFGKRCISYSLDDGRYYPCKQCYDWGEQDPFANIWIDPPEDLSSFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57790			F-box family protein (.1)		Lus10021352 [exp]	0	1
AT2G14850			unknown protein		Lus10002120 [exp]	5.9	0.7775
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	6.9	0.8510
AT1G02290			unknown protein		Lus10018907 [exp]	8.0	0.8132
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	8.8	0.8161
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	10.1	0.8348
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	10.1	0.8325
AT1G26580			unknown protein		Lus10026655 [exp]	10.2	0.8218
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10005749 [exp]	10.4	0.8190
AT1G36730			Translation initiation factor ...		Lus10010980 [exp]	10.5	0.8196
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032606 [exp]	13.0	0.8010

Compare expression of checked genes

Lus10021352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.