Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03870 274 / 1e-88 Glutaredoxin family protein (.1) AT5G01420 164 / 4e-46 Glutaredoxin family protein (.1) AT5G06470 158 / 1e-45 Glutaredoxin family protein (.1) AT4G10630 155 / 2e-43 Glutaredoxin family protein (.1) AT1G64500 155 / 6e-43 Glutaredoxin family protein (.1) AT5G13810 148 / 2e-41 Glutaredoxin family protein (.1) AT1G32760 144 / 1e-39 Glutaredoxin family protein (.1) AT3G57070 145 / 3e-39 Glutaredoxin family protein (.1) AT2G41330 137 / 3e-36 Glutaredoxin family protein (.1) AT5G58530 130 / 1e-34 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017029 [exp] 696 / 0 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10008270 [exp] 170 / 6e-49 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10033238 [exp] 164 / 1e-46 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10028742 [exp] 162 / 1e-45 AT5G01420 221 / 6e-69 Glutaredoxin family protein (.1) Lus10017547 [exp] 156 / 2e-43 AT5G01420 227 / 2e-71 Glutaredoxin family protein (.1) Lus10021255 [exp] 151 / 3e-43 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10013597 [exp] 150 / 9e-43 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10039537 [exp] 146 / 2e-40 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10003194 [exp] 147 / 5e-40 AT1G64500 322 / 3e-108 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G212700 [exp] 424 / 5e-147 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 414 / 7e-143 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 173 / 1e-49 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 171 / 5e-49 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 167 / 8e-48 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 162 / 9e-47 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 161 / 3e-46 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 155 / 2e-44 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 155 / 2e-44 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 153 / 3e-43 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10021353 pacid=23178218 polypeptide=Lus10021353 locus=Lus10021353.g ID=Lus10021353.BGIv1.0 annot-version=v1.0 ATGGGTTGTGTTTCTTCGAAGCACGTCAAGAAGGAAATCCTCCGTGAGAAAACCATCCTCCACAACGGCAATGGTGACGGCGTCCACTCCCCTCACCTCA ACCACATCGTCTCCCTCACTTCCTCCACTTATGGCGCCCTCAAACTCGACTCCACTCTGCACCGCCGCATCCTTCCGGCGGAGGAAGAGGAGGTGAAAGA GAACGGGAAAGAGAAAGAGATAGCCGAATCAGAGCAGGAAACACACTCGCCAGCGAGGCCCGAGGCGCCGGAGGTGATCAATGCGGTGGAATTGATGGAA GGACTAGAGGAAGGAGCACCGCCGCAAGCTCAATCGAAGAAGAGCAGCCCGAAATCCAGGCGGTTCCCGGATTTCGACGCGAGGAGTCCGTTGAAGTTCA TGAACCAAATCGGGTCGCCCCGGAAGGCGAAGACTTTCGGCGGGAAGGAGAACAAAATCAAGCGATCTTCTTCGTCTCCTTCTGATTTCAATTTCACCCC ACGGCCAATCCTCAAACCTAACAGCAACAACAGCAATAATCCGCATCCCAAGGCAGCGATTCGGCTGAGTTACCCGGTGAAATCGTCTCCCAAACTCGCC AAATTCAACACCGAGTCGTCGTCATCCGAGTTGCTATCTTCCAATTCTTCTTCGAATTCGAGTTCGAACTCAAAGCGGAGCTTCAACAGTCCACTCTTCG ATCCAGACCTGGTGGCATTATACGAGCGGGAACTATCAGCGGAAGGAGAGCAAGTCAAAAGAATCATCTCGTTGACTCCAAACAAAGCCCAAAGATTAAA GAACTCGAACGATTCAGAGTCGCTACTCAACGAGTTCGAGGAGAAATGCCCTCCGGGGGGAGAAAACGGCGTTGTAGTGTACACGACGACGCTGCGAGGG ATCAGGAGGACGTACGAGGACTGCAACGCGGTGAGGTCGATCGTGGATTCGTACCACGTCCACGTGATCGAGCGGGACGTGTCGATGGATTCAGGGTTCA AGGAAGAGCTGAGGAGGCTAATGGGGACTAAAGAAGTGAAGGTTCCTCTGGTTTTCGTGAAAGGGAGGCTGATCGGCGGAGCTGCAATCGTGACGAAGCT TGATGAAGAAGGTAAGTTGGAAGGGCTGTTCGGCGGGATTCAGCGGAGGCTCAGCGCCGGATGTCGGAGATGCGGCGGGGTGAGGTTTGTGATGTGTAGG GAGTGTAATGGGAGCTCCAAGGTGTTGGATGAGGAGATGAAGAAGAAGGTGAGGTGTGGTGGGTGTAATGAGAATGGATTGATTCAGTGCCCTGTTTGTT GCTGA
AA sequence Show only first row Show all	>Lus10021353 pacid=23178218 polypeptide=Lus10021353 locus=Lus10021353.g ID=Lus10021353.BGIv1.0 annot-version=v1.0 MGCVSSKHVKKEILREKTILHNGNGDGVHSPHLNHIVSLTSSTYGALKLDSTLHRRILPAEEEEVKENGKEKEIAESEQETHSPARPEAPEVINAVELME GLEEGAPPQAQSKKSSPKSRRFPDFDARSPLKFMNQIGSPRKAKTFGGKENKIKRSSSSPSDFNFTPRPILKPNSNNSNNPHPKAAIRLSYPVKSSPKLA KFNTESSSSELLSSNSSSNSSSNSKRSFNSPLFDPDLVALYERELSAEGEQVKRIISLTPNKAQRLKNSNDSESLLNEFEEKCPPGGENGVVVYTTTLRG IRRTYEDCNAVRSIVDSYHVHVIERDVSMDSGFKEELRRLMGTKEVKVPLVFVKGRLIGGAAIVTKLDEEGKLEGLFGGIQRRLSAGCRRCGGVRFVMCR ECNGSSKVLDEEMKKKVRCGGCNENGLIQCPVCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03870			Glutaredoxin family protein (....		Lus10021353 [exp]	0	1
AT5G01910			unknown protein		Lus10014179 [exp]	1.0	0.9701
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10007321 [exp]	2.4	0.9687
AT5G03870			Glutaredoxin family protein (....		Lus10017029 [exp]	3.5	0.9581
AT5G16250			unknown protein		Lus10026857 [exp]	3.7	0.9525
AT4G03100			Rho GTPase activating protein ...		Lus10024768 [exp]	3.9	0.9548
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005444 [exp]	8.0	0.9382
AT4G02800			unknown protein		Lus10014668 [exp]	8.1	0.9583
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	10.0	0.9350
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	10.4	0.9529
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10029273 [exp]	10.5	0.9463

Compare expression of checked genes

Lus10021353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.