Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52710 111 / 1e-28 unknown protein AT2G36220 104 / 5e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017030 [exp] 397 / 8e-140 AT3G52710 164 / 8e-49 unknown protein Lus10014206 [exp] 209 / 9e-66 AT3G52710 176 / 2e-53 unknown protein Lus10022709 [exp] 115 / 2e-31 AT2G36220 77 / 1e-17 unknown protein Lus10022708 [exp] 94 / 5e-23 AT3G52710 100 / 7e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G212800 [exp] 177 / 2e-53 AT3G52710 153 / 2e-44 unknown protein Potri.016G079500 [exp] 150 / 5e-43 AT2G36220 140 / 1e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021354 pacid=23178312 polypeptide=Lus10021354 locus=Lus10021354.g ID=Lus10021354.BGIv1.0 annot-version=v1.0 ATGCCACAGGTGGATCTGGAGACTCTAGTAGGATCAGTTTGCTCAGGCGGCGGCTGCAGCGACCGCAAAATCACATGCGAAACGCTCGCGCCGGCCGCCC TTGAGGAAAAACAGAATCAGCAAAAGCTAGCTACGGAATCCGATCAATCGTCCGATTTTCCGCCGGAGTCGTTCTGGCTTTCCAAGGACGCGGAGCTGGA TTGGCTCGATCGTAACGCGTTCATCACTCGGCAAGGCTCCACCAGAGGCAGTAGCTTCAATTCGACCAACTTGATCCCTGGTTTTCATCCGAATACAGCG AACTCATCATCTCACTCGCAGCGGTACTCGAATCTAAAGTCCAAAGCGTCCATTATCGGATTGCCGAAGCCGCAGAACTCTTGCTTCGTCGACGGCAAGA GCCGCCGGCATACCAAGCCGGTGAACACGCACCTCTTCCCGAAGAGGTCGGCCTCCACAGCAGGGAAATCGTCGTCCTCTGTTGCGGAGCCTGGTTCGCC GAAGGTGTCGTGTATGGGAAGGGTGCGGTCGAAGAGAGATCGGAACCGGAGATTGCGTAGCCGCCAGCGGTCGAAGCGATCCACGGATCAGCCGGAGTTG AAGAAGGTCAAATCGGTGAGGAGGCGGGAGTCGTCGTCCTCGTCATCGTCGGGATTCGTGGCGAGTATTCGTTCGATTTTCAAGACGTGCTCGAAGTCAA AGAAGCACACGAAAAAGAGCGAATCCGCAGACTCGTCGAGAAAGAGCGAGGCGGCGGCGAGAACGAGCGACATTAGGGATCGGCTTCCGGCTCCCGAAAG AGACGCTCCGCGGAAGAATAGCGCCGGCAAAGAAGTGGTCGCAACGGAGGCCACGGGGAGTTTGGGCGGGATGATGAAATTTTCGTCGGGGAGGAGATCT GAAGATTGGGTCAGTGTAATTGACGTGGCCTGA
AA sequence Show only first row Show all	>Lus10021354 pacid=23178312 polypeptide=Lus10021354 locus=Lus10021354.g ID=Lus10021354.BGIv1.0 annot-version=v1.0 MPQVDLETLVGSVCSGGGCSDRKITCETLAPAALEEKQNQQKLATESDQSSDFPPESFWLSKDAELDWLDRNAFITRQGSTRGSSFNSTNLIPGFHPNTA NSSSHSQRYSNLKSKASIIGLPKPQNSCFVDGKSRRHTKPVNTHLFPKRSASTAGKSSSSVAEPGSPKVSCMGRVRSKRDRNRRLRSRQRSKRSTDQPEL KKVKSVRRRESSSSSSSGFVASIRSIFKTCSKSKKHTKKSESADSSRKSEAAARTSDIRDRLPAPERDAPRKNSAGKEVVATEATGSLGGMMKFSSGRRS EDWVSVIDVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52710			unknown protein		Lus10021354 [exp]	0	1
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10013417 [exp]	4.1	0.9390
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	10.3	0.9388
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10024486 [exp]	13.4	0.9306
					Lus10012705 [exp]	13.8	0.9272
AT4G15420			Ubiquitin fusion degradation U...		Lus10031538 [exp]	19.5	0.8939
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10010284 [exp]	23.8	0.8904
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10037818 [exp]	23.9	0.9292
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	25.5	0.9259
AT2G15220			Plant basic secretory protein ...		Lus10019806 [exp]	27.4	0.8939
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	33.0	0.9264

Compare expression of checked genes

Lus10021354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.