Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32430 817 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 434 / 8e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 410 / 3e-131 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 398 / 8e-127 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 395 / 1e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 398 / 1e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 394 / 1e-124 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 389 / 3e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 385 / 2e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21300 382 / 2e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017032 [exp] 1533 / 0 AT4G32430 844 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 402 / 1e-128 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 407 / 9e-128 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 400 / 2e-127 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 397 / 1e-126 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 399 / 3e-126 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 391 / 3e-123 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 388 / 6e-123 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 388 / 2e-122 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G042100 [exp] 974 / 0 AT4G32430 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 417 / 3e-135 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 411 / 7e-132 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 407 / 1e-129 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 407 / 3e-128 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G058700 [exp] 403 / 7e-128 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 406 / 9e-128 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 404 / 1e-127 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 399 / 3e-126 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G007800 [exp] 396 / 5e-126 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021355 pacid=23178229 polypeptide=Lus10021355 locus=Lus10021355.g ID=Lus10021355.BGIv1.0 annot-version=v1.0 ATGATTGCCCGCCAACAGTCTCTCAAAGCCCTCCAAGTGGTAGCCGAGCAACGATCAACTCGCTCTTTAAACCCTCAACTACTAAACCATGCATGCCAAC TGTTCGACAAAACTCCGGGACACGTTAACCGTTCCATGGTCGAATCTCTTCGACGAAAGCTCCCGTTTCAAGCGCTTGAGGTCTTCAGCAAGCAGTTTCA AATGGGCGGAAGTATTGATCAGATTACCATTGCTCTCTCACTCAAAGCTTGCAGTGGGGACCCATTTCTGGGCTCTCAAATCCATGGCTTTTCTGTTAGT TCTGGCTTCTTTTCCTCGTATATCGCCGTGGCAAATTCGTTGATGAACATGTACTGTAAAGCTGGAGAATTTGCTAAGGCTGTGTGCATCTTTGACAAGT TGGCTGACCCTGATGCTGTTTCGTGGAATACAGTGCTCTCAGGTTTTAGTAGGAGTGAAGATGCTCTGAGTTTCGCTTGTCGAATGAATGCTAGTGGGGT TATTTTTGACCCTGTAACTTATACTACCGCTCTTTCCTTTTGCTTGAGGCATGATGAATTTCGATTTGGATTGCAGTTACACACCTGTATAGCAAAGTCT GGGTTAGATTGTGAAACTTATGTTGGAAATGCACTTATAAGTCTGTATTGTAGATGGGAACGGCTAACCGAGGCTAGGAGAATCTTCGACGAAATGCCAA GTAAGGATTTGGTTTCCTGGAATGCAATTATATCAGGGTATAGCCAGGGAGGTATTCATGGGTTGGAAGCGATATCAATGTTCATTGAGACTGTTAGAAG AGGAATAGAGCCTGATCATGTCTTACTGACAGGAACAGTTTCCGCTTGTGGTCACGAGCGCAACTTAGAACTGGGGAGACAGATGCATAGTTTCAGCATC AAACGAGGATATGGAAAACATGTTTCTGTCGGGAATGTCCTGATATCGACATATTCAAAGTGCGATCATGTTGAAGAAGCTGCATTGGTGTTCAAAAATA TGAATCAGCGCAATGTTGTGTCATGGACGACAATGATAACTATAAACGAAGAAGCCGCTGTGCCACTCTTTGATGAGATGAGATTAGACGGTGTTCCCCC TAATCACGTGACGTTTGTGGGACTGCTCCATGCTGTGACAGTTAGGGATTTGGTGGAACATGGCAAGAAGATTCATGGGATTTGTTTGAAAGCTGGTTTC TCGACAGAACCAAACGTATGCAATAGCCTCATCACAATGTATGCTAAGTTCAAGTCCATGGATGATTCGGAGAAAGTATTTCAGGAGCTTGATCAGAGAG AGATCATAACTTGGAATGCTTTAATTTCAGGGTACGCACAGAATGGATTGAGTCAAGCAGCTATTCAGATCTTCATGTCTGCAGTTTCAGAAGTGAAGCC CAACCAATACACTTTCGGTAGTGTGTTGAGTGCAATAGGTGCAGCTGAGGATGTGTCTTTAAGACATGGCAAAAGGTGTCACTCCCAAATCATAAAACTC GGATTAAACACGGACCCAGTTGTCTCATCGGCACTCCTTGACATGTACGCAAAGCGTGGCAGCATGTTTGAGTCCGAAAGAGTCTTCTCCGAGACAACTC AGCAAACCCAAGTCTCGTGGACATCAATGATATCTGCCTATTCCAGACACGGAGACTACGAATCAGTCATGATTTGGTTCAAGAGAATGCTAGCAGCACA AGTGGAACCCGATTCAATCACTTTTCTATCTGTTTTAACAGCTTGTGGTAGAAAAGGAATGATCGATACAGGACGTCAACTATTTGACTCGATGACCAGA GAGTATAAAATCAAACCATCTCCGGAGCATTACTCATGTATGGTAGACATGTTGGGTCGTGCAGGACGACTGGAGGAAGCCAATGAGCTAGTGAAACAGA TTCCAGGAGGACCGGGTTTATCAGTGCTGCAAAGCTTACTGGGATCTTGCAGGACATACGGGTATGTGGAGTTGGGAGAGAAGGCAGCCAAGGCATTGTT GGAAATGGAGCCAAATGAATCAGGGACTTACGTACTGATGGCCAACTTGTACGCTGAGAAGGGGCAGTGGGATAATGTGTCCAAGTTCAAGAGGGCAATG AGAGAAGAAGGTGTACTGAAGAAGATTGGTTTCAGCTGGGTGGACGTTGATCACGCTGCTGATGCTTCACTATCGTTGCATGGGTTCTCGTCGGGGGACA TGACACATCCAATGGCGGACAAGATTCGTCAGACAGCGGAGTTTTTGGGGTTGGAAATGAAGTTCTTGAGGGGAAGTGAGGCGGAGAGTTACAAGTATCC TGCGACGTTAGAATCCATGGGTTTTGTAGCGTGA
AA sequence Show only first row Show all	>Lus10021355 pacid=23178229 polypeptide=Lus10021355 locus=Lus10021355.g ID=Lus10021355.BGIv1.0 annot-version=v1.0 MIARQQSLKALQVVAEQRSTRSLNPQLLNHACQLFDKTPGHVNRSMVESLRRKLPFQALEVFSKQFQMGGSIDQITIALSLKACSGDPFLGSQIHGFSVS SGFFSSYIAVANSLMNMYCKAGEFAKAVCIFDKLADPDAVSWNTVLSGFSRSEDALSFACRMNASGVIFDPVTYTTALSFCLRHDEFRFGLQLHTCIAKS GLDCETYVGNALISLYCRWERLTEARRIFDEMPSKDLVSWNAIISGYSQGGIHGLEAISMFIETVRRGIEPDHVLLTGTVSACGHERNLELGRQMHSFSI KRGYGKHVSVGNVLISTYSKCDHVEEAALVFKNMNQRNVVSWTTMITINEEAAVPLFDEMRLDGVPPNHVTFVGLLHAVTVRDLVEHGKKIHGICLKAGF STEPNVCNSLITMYAKFKSMDDSEKVFQELDQREIITWNALISGYAQNGLSQAAIQIFMSAVSEVKPNQYTFGSVLSAIGAAEDVSLRHGKRCHSQIIKL GLNTDPVVSSALLDMYAKRGSMFESERVFSETTQQTQVSWTSMISAYSRHGDYESVMIWFKRMLAAQVEPDSITFLSVLTACGRKGMIDTGRQLFDSMTR EYKIKPSPEHYSCMVDMLGRAGRLEEANELVKQIPGGPGLSVLQSLLGSCRTYGYVELGEKAAKALLEMEPNESGTYVLMANLYAEKGQWDNVSKFKRAM REEGVLKKIGFSWVDVDHAADASLSLHGFSSGDMTHPMADKIRQTAEFLGLEMKFLRGSEAESYKYPATLESMGFVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10021355 [exp]	0	1
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10017186 [exp]	1.4	0.9407
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10004474 [exp]	2.4	0.9308
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10000117 [exp]	3.2	0.9310
AT5G49610			F-box family protein (.1)		Lus10000860 [exp]	3.7	0.9301
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041934 [exp]	4.4	0.9102
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	5.2	0.9246
					Lus10011266 [exp]	5.7	0.9181
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	7.2	0.9344
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	7.3	0.9369
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10019153 [exp]	7.5	0.9033

Compare expression of checked genes

Lus10021355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.