Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52720 220 / 1e-70 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT1G08080 199 / 1e-62 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT1G08065 165 / 2e-49 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT4G20990 154 / 3e-45 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT2G28210 151 / 1e-44 ATACA2 alpha carbonic anhydrase 2 (.1) AT5G04180 152 / 2e-44 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT4G21000 127 / 5e-35 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT5G56330 119 / 2e-31 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017033 [exp] 521 / 0 AT3G52720 231 / 4e-75 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Lus10022710 [exp] 286 / 1e-96 AT3G52720 218 / 4e-70 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Lus10021455 [exp] 195 / 7e-61 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 192 / 1e-59 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042030 [exp] 192 / 5e-59 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10018017 [exp] 191 / 2e-58 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021454 [exp] 187 / 5e-58 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 183 / 2e-56 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042013 [exp] 172 / 1e-51 AT4G20990 224 / 2e-72 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079600 [exp] 238 / 1e-77 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.006G212900 [exp] 218 / 6e-70 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.004G212800 [exp] 189 / 1e-58 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G047500 [exp] 182 / 9e-56 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.009G010200 [exp] 180 / 3e-55 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.016G043700 [exp] 176 / 2e-53 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G121900 [exp] 173 / 2e-52 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G047400 [exp] 169 / 6e-51 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10021356 pacid=23178168 polypeptide=Lus10021356 locus=Lus10021356.g ID=Lus10021356.BGIv1.0 annot-version=v1.0 ATGGGTACAACAACTGATCAAACAGCATCATTCATCACCTTCTCTGTTCTAGCAACCATTATTGCTCTGTCTCTAGCTCTCTGTTCTTGTCTTGAAGCCG CTCCTCCTGCTCCTTCAGGGTTTGTGAACTTTGGTTACAGGGGGCCAAACGGACCTCAGAGATGGGGGAGCTTGACCCCCAATTACAAAGAGTGCGATAT TGGGAAATTGCAGTCTCCTATCGACATTAACAGGCTGGATGTTGTGGAGAACAAGAAGCTTGAGAGATTGAAAGGCAATTACATTGCTGTTAACGCCACT CTTATTAACACTGGCCGTAGCATCATGGTTCATTACGACGATATGCACGCTGGAGAGCTGGAAGTAGATGGGAAACAATATAAATTGCAGCAAATGCATT GGCATTCTCCTTCAGAGCACACTTTTGATGGACACCAGTATCCATTGGAGCTCCACTTAGTTCATCAAGCAGACGATGGTATTTTCACAGTTGTATCAGT CCTCCATCAGTACGGACCCAACGAAGATTCACTCATCAAGAAGATTAGAGTGGAGTTGGAGGAGCTAGCTGAGGAGAAATCGTCGTCGCAGAAAGATGGA GGAACAGTAGTAGCAATACCACCACAAGTGAAGCTGAGGAAGAAAATAGAGTACAAGATGCTGAAGAAGAAAACACACAAGTACTACAGATACACTGGCT CCCTCACTTCTCCTCCTTGCACTCAAAACGTCACCTGGAACGTCCTTGCTAAGGTGAGGAGTGTGTCAAGGGAACAGGTGAAAGCTCTGAGAGATCTGTT ATCGGCAGATTGCAAGGCGAATGCTAGGCCGTTACAGCCTCTTAATGGCAGGAAAGTTGAGGTCTACAAGGAACCTAACGATCTCTGA
AA sequence Show only first row Show all	>Lus10021356 pacid=23178168 polypeptide=Lus10021356 locus=Lus10021356.g ID=Lus10021356.BGIv1.0 annot-version=v1.0 MGTTTDQTASFITFSVLATIIALSLALCSCLEAAPPAPSGFVNFGYRGPNGPQRWGSLTPNYKECDIGKLQSPIDINRLDVVENKKLERLKGNYIAVNAT LINTGRSIMVHYDDMHAGELEVDGKQYKLQQMHWHSPSEHTFDGHQYPLELHLVHQADDGIFTVVSVLHQYGPNEDSLIKKIRVELEELAEEKSSSQKDG GTVVAIPPQVKLRKKIEYKMLKKKTHKYYRYTGSLTSPPCTQNVTWNVLAKVRSVSREQVKALRDLLSADCKANARPLQPLNGRKVEVYKEPNDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10021356 [exp]	0	1
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	2.4	0.8157
					Lus10038294 [exp]	10.8	0.7670
AT1G63430			Leucine-rich repeat protein ki...		Lus10008310 [exp]	11.4	0.7532
AT1G67570			Protein of unknown function (D...		Lus10032513 [exp]	18.0	0.7142
AT5G18020			SAUR-like auxin-responsive pro...		Lus10039020 [exp]	22.0	0.7264
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	24.0	0.7317
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10000322 [exp]	26.7	0.7243
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	37.3	0.7132
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	38.2	0.7253
AT5G22930			Protein of unknown function (D...		Lus10037944 [exp]	42.1	0.6827

Compare expression of checked genes

Lus10021356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.