Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03880 369 / 3e-127 Thioredoxin family protein (.1) AT4G10000 136 / 6e-37 Thioredoxin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017034 [exp] 513 / 0 AT5G03880 402 / 4e-140 Thioredoxin family protein (.1) Lus10001283 [exp] 139 / 2e-37 AT4G10000 395 / 5e-138 Thioredoxin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213000 [exp] 394 / 4e-137 AT5G03880 455 / 8e-162 Thioredoxin family protein (.1) Potri.013G102000 [exp] 132 / 3e-35 AT4G10000 434 / 2e-153 Thioredoxin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021357 pacid=23178199 polypeptide=Lus10021357 locus=Lus10021357.g ID=Lus10021357.BGIv1.0 annot-version=v1.0 ATGGCGGGAGTCATCAATGTCTCACACTTTCCTGTCTTCCGTACCGTCACTCGGAAATCAGTTGCCGCCGGGAGCAGAAGCTCAATTCCGGTAATCAGGG CCTCCTCCTCCTCGCCGGGGACACCTCCTCCGGACTCTAGCACGACGACGACAACGAAGACTGCAACAACCACAGGAAGAGAAGACGAATCAGCGGCTAA ATTTACTGCTCCAGCTGGTTTCAAGACGCCGGAGCCGAAGCGGTTCGCCGTCAGGCCGGATAAGGGTGGTGACGTTGCTGGAGCCGCTCTTGCCATATTC TTCCGTTTCGGGACTGGTGTTTTCCTCGACGGGTACTCTTTGTCTTTCGTGGACAAAGATGACATTCCATCGGACCAATATGCTCTAGAACTGTTTGGTT ACAAAGTGAAAGAGATGTCGAAACTTGGACCTCGTCCAGAGAAGCCGATTGAGATCTATGAGTTTGAAAGTTATGAACATACACTAAATGTTTGTATTGT TTTTCTTTCTCCATGTATGGATGGTGGCAAACGACCTGCGAACTTCAGCTGTCCTTTCTGTCGTAAGGTTAGGGAAATTGTTGCAGTATTGGATCTTGAC GTTCTATTTTATCCCTGCCCAAGGGACGGTCCCAATTTTCGACCCAAGGCTATTGAGTTGGGTGGCAAGAAGCAATTTCCGTATATGGTTGACCCAAATA CTGGAACTGCAATGTATGAGTCCGATCAAATTATCAAGTATCTGGTTGATAAATACGGTAATGGACAAGTTCCTCTCATGCTGTCGCTTGGCCTTCTAAC GACTTTAACTGCAGGCCTTGCTATGATTGGTCGTTCGGGAAGGCTCACCCATGGTCGTTTCAACTACCTTGTCAATGCTGTACAGGGTCAGCAATATCGT CCATCAAAATTACCTCCAAAACCACTAGAGATATGGGCATATGAGGGTTCTCCCTTCTGCAAGCTTGTCCGTGAAGTTCTCGTGGAGTTAGAACTACCGC ATATTTATCGGAGTTGTGCCCGTGGCAGCCCAAAACGGCAGATACTGTATGATAAAACTGGAACCTTTCAGGCACCTTACCTGGAAGATCCAAACACGGG AGTCCAAATGTACGAAAGTGCAGAAATCATCGAGTACCTGACCGCAACTTATGCTGTTTAA
AA sequence Show only first row Show all	>Lus10021357 pacid=23178199 polypeptide=Lus10021357 locus=Lus10021357.g ID=Lus10021357.BGIv1.0 annot-version=v1.0 MAGVINVSHFPVFRTVTRKSVAAGSRSSIPVIRASSSSPGTPPPDSSTTTTTKTATTTGREDESAAKFTAPAGFKTPEPKRFAVRPDKGGDVAGAALAIF FRFGTGVFLDGYSLSFVDKDDIPSDQYALELFGYKVKEMSKLGPRPEKPIEIYEFESYEHTLNVCIVFLSPCMDGGKRPANFSCPFCRKVREIVAVLDLD VLFYPCPRDGPNFRPKAIELGGKKQFPYMVDPNTGTAMYESDQIIKYLVDKYGNGQVPLMLSLGLLTTLTAGLAMIGRSGRLTHGRFNYLVNAVQGQQYR PSKLPPKPLEIWAYEGSPFCKLVREVLVELELPHIYRSCARGSPKRQILYDKTGTFQAPYLEDPNTGVQMYESAEIIEYLTATYAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03880			Thioredoxin family protein (.1...		Lus10021357 [exp]	0	1
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10002744 [exp]	1.7	0.9519
AT5G03880			Thioredoxin family protein (.1...		Lus10017034 [exp]	2.4	0.9394
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	4.9	0.9331
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	5.5	0.9479
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10016327 [exp]	5.5	0.9450
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10019342 [exp]	7.3	0.9174
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10031435 [exp]	8.4	0.9354
AT2G23840			HNH endonuclease (.1)		Lus10007425 [exp]	9.0	0.9131
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10009359 [exp]	9.8	0.9186
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	11.1	0.9417

Compare expression of checked genes

Lus10021357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.