Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10120 98 / 5e-26 unknown protein AT5G03890 97 / 2e-25 unknown protein AT1G66480 46 / 4e-06 PMI2 plastid movement impaired 2 (.1) AT1G60010 42 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017035 [exp] 202 / 2e-66 AT3G10120 119 / 7e-34 unknown protein Lus10002068 [exp] 44 / 8e-06 AT4G21920 65 / 1e-14 unknown protein Lus10006774 [exp] 41 / 0.0001 AT4G21920 62 / 5e-13 unknown protein Lus10008274 [exp] 42 / 0.0002 AT1G64700 118 / 9e-33 unknown protein Lus10015117 [exp] 40 / 0.0002 AT5G03890 44 / 3e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213100 [exp] 139 / 5e-42 AT3G10120 122 / 9e-36 unknown protein Potri.016G079700 [exp] 125 / 6e-37 AT3G10120 114 / 1e-32 unknown protein Potri.012G022300 [exp] 57 / 3e-10 AT5G03890 62 / 3e-12 unknown protein Potri.011G153000 [exp] 49 / 3e-07 AT1G64700 160 / 1e-49 unknown protein Potri.001G448500 [exp] 47 / 2e-06 AT1G64700 154 / 3e-47 unknown protein Potri.015G005700 [exp] 42 / 6e-05 AT5G03890 49 / 2e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021358 pacid=23178181 polypeptide=Lus10021358 locus=Lus10021358.g ID=Lus10021358.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCTTGGTTGTTGAAGAGAAAGTAGTGAAGGTGATGAGACCAGATGGGAAGATCTTGGAGTACACTACCCCAATCCATGTCCACCAAGTTC TCTCAGATTTTCCAGGCCAATATTCAGCTCTAGCAGCAGCAGCAAGTGATTCATCATCAGTTCAGAATCATTATTTGCTCCCAGAATCGAAGCTTCTTGG TGGGAAATTGTACTGTCTTGTTCCTGTTCCTTCTTCAGCGCCGAAATTAGTGGTTAAGAAGAAGACGGAGAAGAAGGTGAGGTTCTCTGTTCCAGAAGTA GAAAAACAGAGCATCAAGAAGGAAGAAGAAGGTGAAGAGACAAGTGGAGGAGGTGTGGTAAGGATTAAGTTGGTGATTAGCAAGCATGAGCTGGAGGAGT TGCTGAAGAGAAGTGGAGTTTCTATGAGTGACATGGTTTCTCATCTTCAGGGTCAACAGCAACAGAGACTGGTCAAGAAAGTTGCAGAGGAAGATGAAAA TGATGATACGGAGAGATTTTGGAAGCCTGCATTAGAGAGTATTCCTGAGTTGGATTTGTAA
AA sequence Show only first row Show all	>Lus10021358 pacid=23178181 polypeptide=Lus10021358 locus=Lus10021358.g ID=Lus10021358.BGIv1.0 annot-version=v1.0 MGNCLVVEEKVVKVMRPDGKILEYTTPIHVHQVLSDFPGQYSALAAAASDSSSVQNHYLLPESKLLGGKLYCLVPVPSSAPKLVVKKKTEKKVRFSVPEV EKQSIKKEEEGEETSGGGVVRIKLVISKHELEELLKRSGVSMSDMVSHLQGQQQQRLVKKVAEEDENDDTERFWKPALESIPELDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10120			unknown protein		Lus10021358 [exp]	0	1
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042927 [exp]	2.0	0.8687
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	2.4	0.8472
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10001682 [exp]	2.8	0.8702
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10009153 [exp]	5.9	0.8093
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	8.7	0.7870
AT4G23210		HIG1, CRK13	cysteine-rich RLK (RECEPTOR-li...		Lus10003735 [exp]	13.9	0.7103
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	15.0	0.7941
AT3G07425			unknown protein		Lus10025871 [exp]	16.2	0.7433
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028761 [exp]	16.3	0.7510
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	16.7	0.7925

Compare expression of checked genes

Lus10021358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.