Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74350 837 / 0 Intron maturase, type II family protein (.1) AT5G04050 199 / 1e-54 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) ATMG00520 76 / 7e-14 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017036 [exp] 438 / 3e-148 AT1G74350 200 / 1e-58 Intron maturase, type II family protein (.1) Lus10038971 [exp] 257 / 8e-74 AT5G04050 704 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10027263 [exp] 252 / 6e-72 AT5G04050 690 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10017037 [exp] 228 / 7e-71 AT1G74350 168 / 7e-50 Intron maturase, type II family protein (.1) Lus10036278 [exp] 56 / 5e-09 AT5G04050 87 / 8e-21 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G063750 [exp] 972 / 0 AT1G74350 877 / 0.0 Intron maturase, type II family protein (.1) Potri.006G043650 [exp] 249 / 8e-71 AT5G04050 742 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Potri.007G062302 [exp] 72 / 7e-13 ATMG00520 1095 / 0.0 Intron maturase, type II family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0027 [flax] [poplar] RdRP PF00078 [flax] [poplar] RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) CL0359 [flax] [poplar] Intron-mat_II PF01348 [flax] [poplar] Intron_maturas2 Type II intron maturase
Representative CDS sequence Show only first row Show all	>Lus10021359 pacid=23178174 polypeptide=Lus10021359 locus=Lus10021359.g ID=Lus10021359.BGIv1.0 annot-version=v1.0 ATGGTGATAATTCGATGGCTTTCAAGAGTATGCAAGTGCAAGGAGCTGCCACGTGTTATGCCGCAACAAAGTATCAACTTTAGCCGTGTCAATGGCATAG CAGGAGGATCTACAGAGAGATTACAAGGTTTTCTTGGTTTTTCAACTGCTTCAGCTGCTTCGGGTACTGCTGATAAAGGCTTGAGAAAGATGACATTAGC CACAGGTTTGGCTAACCTAGTTGCGGAAATTTCCCATCCTGAGGATGATGGCATGGCTCTTTCAGCTGCTCCTACTACCGCTGACAAAGGCTTGAGAAAG ATGACATTAGCTACAGACTTGGCTGACCTAGTTGAGGCAATACCCAATCCTGGTGATAAGGTGCCAGAAAGTCGAATAAAATTGAAGAGGTACCTTGAAA TCCGTATGAAAAAGAGAGTGAAGGGGCACTACGTTGATGGGAAATTTGAGAACTTGATGACCAAAGTGATTGCCAACCCAGAAACGCTTCAGGATGCTTA CAACTGTATAATGCTGAATGCGAATGTGGATATCAATTCAGAGAGCTGTAACAATGTTTGCTTTCGGTCTATGGCTGAAGAGCTCTTGAATGGGACTTTT AATATCAAGGAGAATACTACTTCCATCTCAACGAGGAGGGAGCCAAAAGAAACACTTATTCTACCTAACCTTAAGTTGACAGTCCTTCAGGAGGCTATCA GAATGACATTGGAAGTGGTCTACCGGCCTCATTTCGCTAAAATATCGCATGGTTGTAGGAGCGGGAGGAGCCACCAAACTGCTATCAAGTACATCACCAA AGAGTTCGCTAATCCTGATTGGTGGTTTACAGTGATCATAAATAAGAAGTTGGATGCTTGTATTTTGGCTAAACTTAAATCCGTGATGGAGGAAAAGATC GACGATCCATGCATGTTTGAGATAATTCAAGGGCTGTTTGAGGCTGAGGTACTGAATTTGGAGTTTGGTGGTTTCCCAAAAGGGCATGGTCTTCCCCAAG AAGGTGTGCTATCTCCTATACTGATAAACATATATCTCGATGCCTTTGACCGGGAATACTACAGACTCCTGTTGAACTACGAAGCTCTGAATCCAGGTCT ACAGTGTAATGAAGAAGTGGCACACTCGAATCTGCGGACATGGTTTAAGAGGCAGATAAAATCTAGTGGTAATAGGAATGTGGATGAGAAGCATTCTGGT CCTCGAATATTCTGTTGTCGCTTCATGGATGAATTACTTTTTGCAGTTTCTGGACCCAAAGATGTTGCTCTTAATTTCAAAACTGAGGTACTAGATTACT TGCGTGATTATTTGCACTTAGATGCTACTACTGATGCAGAAATATCGCCTGGTATGCGTAATAGATCCCTTAGGTTTTTGGGCACTTTGGTTAAAAGAGA TATAAAAGAGACTCCAGCTGTAAAGGCTGTTCACAAGCTAAAGGAGAAGGTGAAGTTATTTGCATTACAGAAACAGGAGGCATGGGATAGAGGCATAGTT AGAATTGGAAAAAAAACTTTAGGTCATGGGTTGAGAATGGTTAAAGAGTCAGAGATTAGGCATCTAGCTAACCCCGAGTCTCCTCTAAACCAGATTTCTT GCTTCCGGAAACCTGGAATGGAGACTGATCATTGGTACAAACATTTGGTTAAGATTTGGGTACAAAACCTTAGTGCTAAAGTCATACGCAATGAGCAGTT TATCTTTTCTAGTATTGTGGAACCTGCTCTCCCCAATGAACTCAGAGAGTCGTACTTTGAATTCCAAAAGTGTGCAGAAAGATATGTTCGTTCTGAGACA GCTACTACACTTGCTCTTCTGCCAGGTTCTAGCACCCCTGCTGAAACTGTCACAAAGATCTTCGCCCCGGTTTATGGCATTCAGAAACGTTTGATTCGGT ATGGCTTGACCACATCTAGTGGACATGCCCGTGCTGTACACTTGCTGATGTTACAAGATGACAACCAAATCATTAATTGGTTCTATGGCATTATCTGTCG CTGGCTTAGGTGGTACAGCTATTGTGATAACTTTGCTGAAGTTGAGGCCATCATTCGATACCAGGTGAGAAAATCTTGCATCCGTACTCTTGCTGCAAAA CATCGCATCTATGAGACTGACATAGAAAAACAATTTGATGCTGAATTGAGCAAGATCTCGTCTATCGATGAGCTAGATGAAGGAATGGTGTCTGATTCAT CAGGATGTCAACCCGAGGATAATTTTGGAGCTATGACATATGGAATTGCATATAGTGGCTTAAGCTTGTTATCATTAGGAAGAATCACCAGTGAGGGACG GCCTTGCAATTGTTTTGTTATGGGGTGTTCAGCTGCAGCACCAGCTGTGTATACTCTACATGTAATGGAAAGGCAGAAGTTTCCTGGATGGAAAACGGGA TTTTCAACTTGCATTCATCCCAGTTTGAATAAACGGCGAATGGGCTTGTGTGAAAAACACTTGAAGGATTTGTATCTTGGTCAAATATCACTTCAGTCTG TAGATTTCGGTTCGTGGAAATGA
AA sequence Show only first row Show all	>Lus10021359 pacid=23178174 polypeptide=Lus10021359 locus=Lus10021359.g ID=Lus10021359.BGIv1.0 annot-version=v1.0 MVIIRWLSRVCKCKELPRVMPQQSINFSRVNGIAGGSTERLQGFLGFSTASAASGTADKGLRKMTLATGLANLVAEISHPEDDGMALSAAPTTADKGLRK MTLATDLADLVEAIPNPGDKVPESRIKLKRYLEIRMKKRVKGHYVDGKFENLMTKVIANPETLQDAYNCIMLNANVDINSESCNNVCFRSMAEELLNGTF NIKENTTSISTRREPKETLILPNLKLTVLQEAIRMTLEVVYRPHFAKISHGCRSGRSHQTAIKYITKEFANPDWWFTVIINKKLDACILAKLKSVMEEKI DDPCMFEIIQGLFEAEVLNLEFGGFPKGHGLPQEGVLSPILINIYLDAFDREYYRLLLNYEALNPGLQCNEEVAHSNLRTWFKRQIKSSGNRNVDEKHSG PRIFCCRFMDELLFAVSGPKDVALNFKTEVLDYLRDYLHLDATTDAEISPGMRNRSLRFLGTLVKRDIKETPAVKAVHKLKEKVKLFALQKQEAWDRGIV RIGKKTLGHGLRMVKESEIRHLANPESPLNQISCFRKPGMETDHWYKHLVKIWVQNLSAKVIRNEQFIFSSIVEPALPNELRESYFEFQKCAERYVRSET ATTLALLPGSSTPAETVTKIFAPVYGIQKRLIRYGLTTSSGHARAVHLLMLQDDNQIINWFYGIICRWLRWYSYCDNFAEVEAIIRYQVRKSCIRTLAAK HRIYETDIEKQFDAELSKISSIDELDEGMVSDSSGCQPEDNFGAMTYGIAYSGLSLLSLGRITSEGRPCNCFVMGCSAAAPAVYTLHVMERQKFPGWKTG FSTCIHPSLNKRRMGLCEKHLKDLYLGQISLQSVDFGSWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74350			Intron maturase, type II famil...		Lus10021359 [exp]	0	1
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	7.7	0.8882
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	8.1	0.8930
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	9.6	0.8645
AT1G79950			RAD3-like DNA-binding helicase...		Lus10011460 [exp]	16.4	0.8644
AT5G07940			unknown protein		Lus10021621 [exp]	16.6	0.8610
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	17.3	0.8606
AT3G01380			transferases;sulfuric ester hy...		Lus10039473 [exp]	17.5	0.8360
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	19.6	0.8541
AT2G24530			unknown protein		Lus10026225 [exp]	19.9	0.7979
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	21.8	0.8337

Compare expression of checked genes

Lus10021359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.