Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30240 106 / 1e-25 Syntaxin/t-SNARE family protein (.1) AT2G18860 100 / 9e-24 Syntaxin/t-SNARE family protein (.1.2) AT1G27700 98 / 1e-22 Syntaxin/t-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017038 [exp] 790 / 0 AT4G30240 105 / 3e-25 Syntaxin/t-SNARE family protein (.1) Lus10007766 [exp] 115 / 1e-28 AT1G27700 292 / 2e-98 Syntaxin/t-SNARE family protein (.1) Lus10018703 [exp] 114 / 2e-28 AT1G27700 290 / 2e-97 Syntaxin/t-SNARE family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125000 [exp] 359 / 6e-122 AT1G27700 106 / 6e-26 Syntaxin/t-SNARE family protein (.1) Potri.004G090200 [exp] 349 / 5e-118 AT1G27700 97 / 1e-22 Syntaxin/t-SNARE family protein (.1) Potri.014G019100 [exp] 109 / 1e-26 AT1G27700 276 / 1e-91 Syntaxin/t-SNARE family protein (.1) Potri.006G168800 [exp] 106 / 1e-25 AT4G30240 273 / 9e-91 Syntaxin/t-SNARE family protein (.1) Potri.018G093400 [exp] 105 / 3e-25 AT4G30240 263 / 8e-87 Syntaxin/t-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09177 [flax] [poplar] Syntaxin-6_N Syntaxin 6, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10021360 pacid=23178235 polypeptide=Lus10021360 locus=Lus10021360.g ID=Lus10021360.BGIv1.0 annot-version=v1.0 ATGGCGTCCAGTTTTCAGCAATGGGAAGCGGATCCTCTCTTCTCAGCTGCTGAAGTTGTCCAAGACTCTGCAGATAGGATGGAGTCATTGTACCGTCTTC TTTTGCATGATCAAACCCTAATTCAAGAGGATCATTCCGACCCTAAGCTGCTTACCGCAATCGATTATCATAGACGTGATTTGGTAACTATTCTCGAAAC CGCAAAGTGGCAGTTGGAAGATTTCGAAAGAGCCGTCAACTCTTCAGCAATGGCAGATAAGTCTCGATCTAAGGAAGATGTGGTAGCTAGACATAGACAG TTCATTACAGCAATTAGGGAACAGATAAAGCTCGTCGAGACAAGAATAGAGGGTCCTTCTTCAATGGGGAAGAAAAATTCTTGGGTGAATTTGAATGAAC AGGACCGGGATGGGTTGGCATTATTTCTTTCTGGTGGAAGTCCCAGGGAACATTCGAATTCGAAGTCCAGCATTGTCGATGATAGTAGCATCTTGAGGAA GTTTCTCAATCCAACTTTGGCATCGAGTTTAGGAGATGATGAGATTGTTGAACAAGAAGTAAATGTGAAGGCACAGATGAATGGAGATGCACACTTACAA CGCGGTCTTGTTAATGGGGATATCGATCGGAACCAGAGTTCTCATTACTCTGCGAGGTTAAGTTTTGATGATGCCACGAAACCTATGCAAGAGATTTCTT GTAGTAGAGATTGCGACGAGGGCAAGTGGGACCTGGAAGCCGGTGAAGCCGCTCCGAGAACTGTGTTCCATGAAAACAAATTAAGAGGGGTGTATAGTAG AACTAACTTGAGGTTCTTGAGGAATTTCTGGACCATCTATGGAAGTAGATTTAGCAGGAGCCAGACAAAGAGGTTGAAAGATGGGGAAGAACAAATAAAC TCTCCAATGGCCCGTGATGATTCTCATTATGTGCAGGACCAATATGTAGGATCAAGGTTAGGGTGTGGATTTGAAGGATACCAAGTTCTATATTCCAGAA TTCAAGCTACTTTAGTACAGTTGAGTAGCCATGTTGGTGTGAGATACCAACTATTGCCTTCTCATGTCCAAGTAAATCGGCAGTCGGTGCAAATGATATT GACAATGGTTTTTGCCCTAGTATTTTTGGGTAAGAAACTGCAGCATATTATACAGTTAATGTTTCTGGATTGCAGTCTACCAACAAATCCTCCTTGGATG CTTGTGAAATCTCCAGGAAGCAGTAAATATTCGCTCACCATTGAGTCCAAGCACGGAACATGA
AA sequence Show only first row Show all	>Lus10021360 pacid=23178235 polypeptide=Lus10021360 locus=Lus10021360.g ID=Lus10021360.BGIv1.0 annot-version=v1.0 MASSFQQWEADPLFSAAEVVQDSADRMESLYRLLLHDQTLIQEDHSDPKLLTAIDYHRRDLVTILETAKWQLEDFERAVNSSAMADKSRSKEDVVARHRQ FITAIREQIKLVETRIEGPSSMGKKNSWVNLNEQDRDGLALFLSGGSPREHSNSKSSIVDDSSILRKFLNPTLASSLGDDEIVEQEVNVKAQMNGDAHLQ RGLVNGDIDRNQSSHYSARLSFDDATKPMQEISCSRDCDEGKWDLEAGEAAPRTVFHENKLRGVYSRTNLRFLRNFWTIYGSRFSRSQTKRLKDGEEQIN SPMARDDSHYVQDQYVGSRLGCGFEGYQVLYSRIQATLVQLSSHVGVRYQLLPSHVQVNRQSVQMILTMVFALVFLGKKLQHIIQLMFLDCSLPTNPPWM LVKSPGSSKYSLTIESKHGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30240			Syntaxin/t-SNARE family protei...		Lus10021360 [exp]	0	1
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10013021 [exp]	9.6	0.7564
AT5G10780			unknown protein		Lus10040473 [exp]	10.4	0.8014
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	11.2	0.8156
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014460 [exp]	15.0	0.7972
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10023717 [exp]	16.2	0.8089
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	18.7	0.7850
AT1G24560			unknown protein		Lus10038257 [exp]	20.0	0.7811
AT3G20920			translocation protein-related ...		Lus10009945 [exp]	21.1	0.7961
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10024876 [exp]	25.7	0.7695
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	32.2	0.7740

Compare expression of checked genes

Lus10021360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.