Plant FIBer expression Database

Lus10021361 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03900 575 / 0 Iron-sulphur cluster biosynthesis family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017039
[exp]
909 / 0 AT5G03900 665 / 0.0 Iron-sulphur cluster biosynthesis family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G090400
[exp]
614 / 0 AT5G03900 640 / 0.0 Iron-sulphur cluster biosynthesis family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10021361 pacid=23178183 polypeptide=Lus10021361 locus=Lus10021361.g ID=Lus10021361.BGIv1.0 annot-version=v1.0
ATGGCTTCTCTATCTTCCTGCTTCACCATATCACCCACCAAGTCTTATCCTCCTCCTTCAATCTTCACCCGCCATTCCTTTCCCAGAAACTCAACAGCGC
CACCGTTGACAGTTCCTTGCTACAAAGTCGCGAACTTCAAGTCGTCGCGGCTGGTCGTACGAGCGAGCAGCATTGATGTCACGACTCCAATTAGGCCCGG
TGCCGCCGTGGAGACCGACAAATTGCCGGCGGAAGTCAGGAACCGCACCATGGACGCCGTCAATGAGTGCGGAGGGAGGGTTACTTTGGGTGACGTGGCA
AGTAGAGCTGGGCTTAAGTTGAGTGACGCTCAGAAGGCTCTCCAGGCTCTTGCTGCTGATACCGATGGCTTTCTCGAGGTTTCAGATGATGGGGACGTAC
TTTATGTTTTTCCAAAGGACTACCGCACAAAGCTTGCTGCCAAGTCATTTAGATTGAAAATTGAACCTCTTGTTGATAAGGCAAAGAGCACAGCTGAGTA
TGTCATCAGAGTTTCCTTTGGTACGGCTCTAGTTGCTTCAATTGTAGTGGTGTACACCACTATACTACTACTCCTTTCAAGTAGAAGTGACGAAGACAGA
CGTGAAAGACGCGGTAGATCTTATGGATCAGGGTTCAATGTCTACTTTAATCCTACAGATATATTCTGGAGGCGTAGAGTGCAAGTAGAGGAAAATGAGA
ATATGAATTTCCTTGAATCTATCTTCTCATTTGTATTTGGTGACGGCGATCCAAATCAAGGACTAGAAGAAGAGAGGTGGAAGTTGATTGGACAATTCAT
TTCTTCAAACGGCGGTGTTGTCACAGCCGAAGAACTTGCTCCATATCTTGATCTGCAGACGACTGATGTGAATGATGAATCATATGTCCTGCCGGTTCTC
CTTAAGTTTGATGGCCAGCCAGAAATTGATGACGAGGGCAATATCGTGTATCGATTTCCTTCACTTCAACGTACAGCATCCTCACAAAGAAGTGGTAGGA
AGGAGTATGTGGGGAAGAATAAAAGATGGGCCGAGTGGGTTGGAGGAGTTCAGAACTATCTTGAGGAAAAGAAATTGGAATTCAGTAAAACAAGTGCATC
CGAAAGAGCGATGGTCATTGGCTTAGGTGGGCTCAATTTATTTGGAGTCATTGTTCTTGGGGCCATGATGAAGGATATGACGTTTAGCCAAGGTGGATGG
ATAAAATTTGTTAGCTCCATCTTTCCTCTACTACAGATATATGCTGGTTCCTTCTTTGCAATTCCATTTGTGCGCTGGTTCCTCGTCGCGAGGAAAAACA
CCGAGATAGAAAAGAGAAACATTACTAGGAGAAAATTCGCAAAATCGCTTGAAACGCCTGACATTTCGTTAAGGCGGAAGCTTCTTAGTGCCCGGGATAT
GGCCCAGAAAACTGTGATCGGACAGGATCGCATAGTCTACAGTACTGACAGAGATATGATTGAACAAGATTTCGAGGCTGACGAATGGGAACGGAGATTC
AGAGAGATTGAAAAATCAGAGTAA
AA sequence
>Lus10021361 pacid=23178183 polypeptide=Lus10021361 locus=Lus10021361.g ID=Lus10021361.BGIv1.0 annot-version=v1.0
MASLSSCFTISPTKSYPPPSIFTRHSFPRNSTAPPLTVPCYKVANFKSSRLVVRASSIDVTTPIRPGAAVETDKLPAEVRNRTMDAVNECGGRVTLGDVA
SRAGLKLSDAQKALQALAADTDGFLEVSDDGDVLYVFPKDYRTKLAAKSFRLKIEPLVDKAKSTAEYVIRVSFGTALVASIVVVYTTILLLLSSRSDEDR
RERRGRSYGSGFNVYFNPTDIFWRRRVQVEENENMNFLESIFSFVFGDGDPNQGLEEERWKLIGQFISSNGGVVTAEELAPYLDLQTTDVNDESYVLPVL
LKFDGQPEIDDEGNIVYRFPSLQRTASSQRSGRKEYVGKNKRWAEWVGGVQNYLEEKKLEFSKTSASERAMVIGLGGLNLFGVIVLGAMMKDMTFSQGGW
IKFVSSIFPLLQIYAGSFFAIPFVRWFLVARKNTEIEKRNITRRKFAKSLETPDISLRRKLLSARDMAQKTVIGQDRIVYSTDRDMIEQDFEADEWERRF
REIEKSE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G03900 Iron-sulphur cluster biosynthe... Lus10021361
[exp]
0 1
AT5G64380 Inositol monophosphatase famil... Lus10020433
[exp]
3.3 0.9273
AT5G03900 Iron-sulphur cluster biosynthe... Lus10017039
[exp]
3.9 0.9169
AT1G49380 cytochrome c biogenesis protei... Lus10011311
[exp]
4.5 0.9201
AT2G38330 MATE efflux family protein (.1... Lus10012227
[exp]
6.6 0.9136
AT5G04440 Protein of unknown function (D... Lus10037929
[exp]
6.7 0.8797
AT2G28880 ADCS, EMB1997 embryo defective 1997, aminode... Lus10041403
[exp]
8.8 0.8617
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Lus10034166
[exp]
10.1 0.8762
AT3G15354 SPA3 SPA1-related 3 (.1) Lus10019476
[exp]
12.5 0.9003
AT4G02405 S-adenosyl-L-methionine-depend... Lus10015003
[exp]
13.5 0.8913
AT1G54520 unknown protein Lus10015939
[exp]
15.0 0.9016

Lus10021361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.