Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36240 521 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09900 201 / 8e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09680 185 / 8e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 181 / 2e-50 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G64320 178 / 1e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 177 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 178 / 2e-48 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 175 / 5e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 175 / 6e-48 RPF2 rna processing factor 2 (.1) AT2G15630 173 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017041 [exp] 678 / 0 AT2G36240 436 / 4e-151 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012328 [exp] 176 / 1e-47 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 175 / 2e-47 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 172 / 2e-46 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 171 / 1e-45 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 171 / 2e-45 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 169 / 4e-45 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 167 / 1e-44 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038377 [exp] 166 / 2e-44 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G068700 [exp] 614 / 0 AT2G36240 509 / 4e-178 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G109500 [exp] 190 / 1e-53 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G105700 [exp] 193 / 2e-53 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G045000 [exp] 188 / 1e-52 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 186 / 4e-52 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 185 / 9e-52 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 181 / 2e-50 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 180 / 8e-50 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 179 / 9e-50 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 179 / 3e-49 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021362 pacid=23178230 polypeptide=Lus10021362 locus=Lus10021362.g ID=Lus10021362.BGIv1.0 annot-version=v1.0 ATGGCACTCAACAAGAAACTACCACCGATTCTCAAACGGATTGATCGCCAACAATCTCCGCCGCAGTTGACGCCGGTACCTTTGCCACCGCCTCCATCAG TTCCTCTCTCCCCTCACCCAACCCTCACTCTCACGCCGACTTCTGATTACAATTCACTCACCAATTTCATTGGAGCCCACTTCTCAACCCGACCCGTGAC CGCGGAAAACCTCCTTCACTTCTTCAAATCAAAGCTGCATCACCACCCTAAGTACCGCCATTACGATATCCACATCTTCAGCTGGGCTTCCACGGTCGAT TCTTTCCGACATGATCACACAACTTTCGAATGGATGGCTCGCTCTCTCGCCAACACCAACAGGATATCTGAACTCACCTCGCTACTCCAATTTATTGCTT CAAATCCATGTCCCTGTAGCGAAGGTATCTTCTGTTGTCCCAGAATTGAGTCAATTTTTCAACTTTCTGTTAACGCTTACTGCAAAGCTGGGAACTTGGA TAGTGGGTTGGTGGCTTTTGAGAGTATGAGGAAGTTGATTGATGGGAGGCCTAGCGTAGCGATCTACAACGCTTTGATTAATGGGTTTGTGAAATGCGGG AAGCATGATAAGGCTGTGGAGGTATATAACAAGATGTTGAAGGATAGAGTTAAGCCTGATGTGTTTACTTTTAATATATTGATTAATAGTTACTGCAAGA ACAGCAAGTTTGAGATGGCTTTGGAGTTGTTTAGGGAGATGAGGGAGAAGGGTTGTAGCCCTAATGTTGTTAGTTTCAATACTTTGATTAAAGGGTTCTT CAGACAAGGCAAGATTGAAGATGGGGTTAAAATGGCACATGAGATGATTGATCTTGGGATTGGGTTTTCAGGCGTGACTTGTGAGATTTTGGTTGATGGA CTTTGTAAACAAAGCAGAAGTATTGAAGCATGTGAGTTATTGACTAATTTTTCAAAGAGAGGAGTTGTGCCATCTGAATTTGATCTTTACGCACTTGTGG CTAGTCTTTGTGAACAAAGGTATGCAGGTAGAGCGTTGGAAGTGTTGTATGAGTTGTGGAAGAATGGAAATGTTCCTAGCTTGATTTGTTCTACGACTTT GGTTGAAGGTTTGAGGAAGTCTGGAAGAACAGAAGAAGCTTATAGATTGATGGAGAAGTTGCTGAAAGAATCTATTGTTCCGGATATTATAACATTCAAC TGTCTCCTTCAAGATGTTTGCAAAGCTGGGAGAACGACGGATGCTAATGATCTGAGGCTATTGGGTTCGTCCAGGGGTTTAGAGCCAGATTGGATGACCT ATGACGTTTTGGTATCCGGATATACAGCAGAAGGCAAACGTAAGGAAGGGGAAATTTTGGTGGAAGAGATGCTGGATAAAGATTTTATACCTGATCTTGC TACTTACAACACATTAATGAACGGGCTGACAAATTCTAGAAGTCAAGCACGGAGGCAGCTGAATTCGTCTTCCAAGTAA
AA sequence Show only first row Show all	>Lus10021362 pacid=23178230 polypeptide=Lus10021362 locus=Lus10021362.g ID=Lus10021362.BGIv1.0 annot-version=v1.0 MALNKKLPPILKRIDRQQSPPQLTPVPLPPPPSVPLSPHPTLTLTPTSDYNSLTNFIGAHFSTRPVTAENLLHFFKSKLHHHPKYRHYDIHIFSWASTVD SFRHDHTTFEWMARSLANTNRISELTSLLQFIASNPCPCSEGIFCCPRIESIFQLSVNAYCKAGNLDSGLVAFESMRKLIDGRPSVAIYNALINGFVKCG KHDKAVEVYNKMLKDRVKPDVFTFNILINSYCKNSKFEMALELFREMREKGCSPNVVSFNTLIKGFFRQGKIEDGVKMAHEMIDLGIGFSGVTCEILVDG LCKQSRSIEACELLTNFSKRGVVPSEFDLYALVASLCEQRYAGRALEVLYELWKNGNVPSLICSTTLVEGLRKSGRTEEAYRLMEKLLKESIVPDIITFN CLLQDVCKAGRTTDANDLRLLGSSRGLEPDWMTYDVLVSGYTAEGKRKEGEILVEEMLDKDFIPDLATYNTLMNGLTNSRSQARRQLNSSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10021362 [exp]	0	1
AT5G58720			smr (Small MutS Related) domai...		Lus10040668 [exp]	3.5	0.8648
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	6.6	0.8661
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10032614 [exp]	9.0	0.8488
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10033274 [exp]	12.8	0.8467
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	13.2	0.8520
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	15.2	0.8557
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	15.9	0.8591
AT5G26760			unknown protein		Lus10005906 [exp]	16.5	0.8500
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	17.5	0.8503
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015887 [exp]	20.2	0.8406

Compare expression of checked genes

Lus10021362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.