Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36230 251 / 4e-85 HISN3, APG10 ALBINO AND PALE GREEN 10, Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017042 [exp] 285 / 2e-98 AT2G36230 452 / 1e-161 ALBINO AND PALE GREEN 10, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090500 [exp] 249 / 4e-84 AT2G36230 443 / 9e-158 ALBINO AND PALE GREEN 10, Aldolase-type TIM barrel family protein (.1) Potri.017G124800 [exp] 248 / 1e-83 AT2G36230 435 / 1e-154 ALBINO AND PALE GREEN 10, Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00977 [flax] [poplar] His_biosynth Histidine biosynthesis protein
Representative CDS sequence Show only first row Show all	>Lus10021363 pacid=23178299 polypeptide=Lus10021363 locus=Lus10021363.g ID=Lus10021363.BGIv1.0 annot-version=v1.0 ATGTCAGCAGCACAATTTGCAAACTTGTATAAAGGGGATAATCTAACTGGTGGTCATGTCATTATGCTTGGAGCTGATCCTTTAAGCCAAGCCGCAGCAA TTGAGGCATTTCATGCCTATCCTGGTGGATTGCAAGTTGGAGGTGGTATCAATTCTGAGAATTGCGTAAGTTATATAAACGAAGGAGCTAGCCATGTCAT TGTCACCTCATATGTATTTAGCAATGGTCAGATGGGCTTGCAAAGACTCAAGGATATTGTCCGTGTTGTTGGAAAGGAGAGGCTGGTATTGGACCTTAGC TGCAGAAAGAAGGATGGTAGATACTCAATTGTGACAGATAGGTGGCAGAAATTCAGCAATGTATATCTTGACGAGAAGATACTGGAATTGCTTGCCAGCA TTGCAGATGAATTTTTGGTTCATGGTGTCGACGTTGAAGGAAAAAAGTAA
AA sequence Show only first row Show all	>Lus10021363 pacid=23178299 polypeptide=Lus10021363 locus=Lus10021363.g ID=Lus10021363.BGIv1.0 annot-version=v1.0 MSAAQFANLYKGDNLTGGHVIMLGADPLSQAAAIEAFHAYPGGLQVGGGINSENCVSYINEGASHVIVTSYVFSNGQMGLQRLKDIVRVVGKERLVLDLS CRKKDGRYSIVTDRWQKFSNVYLDEKILELLASIADEFLVHGVDVEGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10021363 [exp]	0	1
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	6.0	0.8473
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	7.7	0.8517
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	7.7	0.8422
AT4G36280			Histidine kinase-, DNA gyrase ...		Lus10025978 [exp]	11.5	0.8102
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10032065 [exp]	17.6	0.8391
AT3G62140			unknown protein		Lus10038035 [exp]	23.8	0.8420
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10014247 [exp]	24.3	0.7542
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	25.1	0.8289
AT5G10070			RNase L inhibitor protein-rela...		Lus10003856 [exp]	26.1	0.8248
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10015090 [exp]	29.4	0.8005

Compare expression of checked genes

Lus10021363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.