Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52740 90 / 2e-23 unknown protein AT3G44450 66 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017046 [exp] 203 / 2e-67 AT3G52740 94 / 6e-25 unknown protein Lus10014197 [exp] 95 / 8e-25 AT3G52740 87 / 2e-22 unknown protein Lus10022717 [exp] 89 / 1e-22 AT3G52740 76 / 3e-18 unknown protein Lus10004872 [exp] 76 / 5e-18 AT3G52740 102 / 6e-29 unknown protein Lus10020614 [exp] 65 / 5e-14 AT3G52740 103 / 2e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G163900 [exp] 81 / 3e-20 AT3G52740 101 / 7e-29 unknown protein Potri.009G164000 [exp] 81 / 1e-19 AT3G52740 95 / 2e-25 unknown protein Potri.004G202900 [exp] 80 / 2e-19 AT3G52740 100 / 1e-27 unknown protein Potri.004G203000 [exp] 77 / 2e-18 AT3G52740 90 / 1e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021366 pacid=23178204 polypeptide=Lus10021366 locus=Lus10021366.g ID=Lus10021366.BGIv1.0 annot-version=v1.0 ATGAAGCCTGTTGAAGACCCTTTGTCACCTAGTCCTTACATACCAGATGATGATCATGATGAGGAGCAAATAGAGGGTAGGCATGGCACAAACTTAAGCC CATCCTCCTCCTCATTAGACGAAGAAGAAGCAGCAGCAGCAGCAGCAACGGCATCATCAGTACAGCAGCAAGATGTCAGCTTTAATGGCTGCCAAGAGGA AGCAGTGGTGGAGGATTCTGCAGAGCCAGCAAAAACGCTACCGTTGCAGGAGGAGGAATTGGGAGATGAAGATTCATGCGTGCGAGAGAAGATAAAGAGG CACAGGACAGAGGTAGCAGGAAGAGTTTGGATCCCAGAGATATGGGGACAGGAAGAACTACTCAAGGATTGGACTGACTGTTCTGCTTTCGATGCTGCTC TACGCTCTAATGGCCTAATGTCTGCCCGTGATGCACTCGTTCGTCAAGGCTTGACGACGCACGATACCATGGGACTCAGTACTGTTGGAAACAGGTGTTG A
AA sequence Show only first row Show all	>Lus10021366 pacid=23178204 polypeptide=Lus10021366 locus=Lus10021366.g ID=Lus10021366.BGIv1.0 annot-version=v1.0 MKPVEDPLSPSPYIPDDDHDEEQIEGRHGTNLSPSSSSLDEEEAAAAAATASSVQQQDVSFNGCQEEAVVEDSAEPAKTLPLQEEELGDEDSCVREKIKR HRTEVAGRVWIPEIWGQEELLKDWTDCSAFDAALRSNGLMSARDALVRQGLTTHDTMGLSTVGNRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52740			unknown protein		Lus10021366 [exp]	0	1
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10017471 [exp]	1.4	0.9536
AT3G52740			unknown protein		Lus10017046 [exp]	2.0	0.9483
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	2.4	0.9439
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10033380 [exp]	5.3	0.9077
AT3G03430			Calcium-binding EF-hand family...		Lus10028519 [exp]	6.6	0.8305
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Lus10009725 [exp]	7.7	0.8553
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	8.5	0.8902
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024875 [exp]	8.9	0.8917
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	11.0	0.8573
					Lus10038478 [exp]	13.3	0.8506

Compare expression of checked genes

Lus10021366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.