Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52750 586 / 0 FTSZ2-2 Tubulin/FtsZ family protein (.1) AT2G36250 584 / 0 ATFTSZ2-1, FTSZ2-1 Tubulin/FtsZ family protein (.1.2) AT5G55280 310 / 6e-101 ATFTSZ1-1, CPFTSZ, FTSZ1-1 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1) AT1G75010 43 / 0.0006 ARC3 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017047 [exp] 903 / 0 AT2G36250 597 / 0.0 Tubulin/FtsZ family protein (.1.2) Lus10014196 [exp] 591 / 0 AT3G52750 569 / 0.0 Tubulin/FtsZ family protein (.1) Lus10022718 [exp] 380 / 3e-130 AT3G52750 381 / 3e-131 Tubulin/FtsZ family protein (.1) Lus10016579 [exp] 308 / 1e-100 AT5G55280 535 / 0.0 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1) Lus10002442 [exp] 261 / 6e-83 AT5G55280 479 / 6e-169 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1) Lus10035091 [exp] 69 / 7e-12 AT1G75010 559 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10031930 [exp] 64 / 1e-10 AT1G75010 549 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10022719 [exp] 0 / 1 ND 35 / 3e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083100 [exp] 599 / 0 AT3G52750 647 / 0.0 Tubulin/FtsZ family protein (.1) Potri.004G203100 [exp] 572 / 0 AT2G36250 613 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.009G164100 [exp] 511 / 2e-179 AT2G36250 524 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.001G359500 [exp] 310 / 3e-101 AT5G55280 547 / 0.0 CHLOROPLAST FTSZ, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [flax] [poplar] Tubulin PF00091 [flax] [poplar] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [flax] [poplar] Tubulin_C PF12327 [flax] [poplar] FtsZ_C FtsZ family, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021367 pacid=23178258 polypeptide=Lus10021367 locus=Lus10021367.g ID=Lus10021367.BGIv1.0 annot-version=v1.0 ATGGCGTGCGTTTCTCCATATTGTACGCCTTCTGATACTAGAAACACGGCGGGAATGTTGACGGTTCTTGGAGGTAGAACGTCGATTGAAAATCACTTGC ACTTGGGAAGAGCCAACGGCTTCCTTAAGCTTTCTGACGAAAAGAATAGGTTCCTCCGTGCGAGCCAGAAGTTGAATTACCCTTTCGTCAGATGCTCATC AAACTCTCACAGGCTGAGTCCTTATCACGGGAAGGAAACATTTCTGGATCTGCATCCGGAAGTGTCGTTGCTCAGAGGTGAAGGTAACGATGTGGTTTCT TCCCCAAGGAGGAAGGATACGCTACCGTGTGGGGATATGACTGATGATTCGTTGGACTACCAGACCAGCTCAAGTGATTATGTTGGGGCTAAGATCAAAG TTGTCGGTGTTGGAGGTGGTGGGTCAAATGCAGTCAACCGCATGATTGAGAGCTCAATGAAAGGAGTGGAGTTCTGGATTGTCAATACCGATATTCAAGC AATTAGGATATCTCCTTTGGATCCAGAGAATCGTCTGCAGATCGGTAAGGAATTAACTAAAGGTCTGGGAGCGGGTGGTAAACCAGAGATTGGAACTAAA GCAGCTAACGAGAGCAAAGAGTCTATAGAAGCAGCACTTTTTGGTGCGGACATGGTTTTTGTCACGGCTGGAATGGGTGGAGGAACTGGAACTGGTGGGG CTCCTGTCATCGCAGGTATTGCTAAAGAAATGGGCATCCTGACAGTTGGCATAGTGACAACCCCCTTTTCGTTTGAGGGACGAAGGAGAACTATTCAGGC ACTTGAAGGAACTGCAGCGTTAAGAGAAAACGTGGACACACTGATTGTTATTCCAAATGACAAGTTATTGACGGCTGTTAACAAGTCTACTCCAGTAACT GAAGCATTTAATCTTGCTGATGACATTCTACGGCAGGGAGTTCGTGGTATCTCTGATATCATTACGATTCCAGGACTTGTCAATGTAGATTTTGCTGATG TCCGTTCAATAATGACAGATGCTGGCTCTTCACTGTTGGGGATAGGAACTGCAACAGGTCAAACAAGGGCCAGAGACGCTGCCTTAAACGCAATTCAATC GCCCCTGTTAGACATTGGCATAGAGCGTGCAACTGGAATTGTGTGGAACATTACTGGTGGAAAGGATTTAACTTTGTTTGAGGTGAATGCTGCAGCAGAA GTGATATATGATCTTGTAGATCCAACCGCGAATCTGATATTTGGAGCCGTCATAGATCCAACATTCGAGGATCAAGTCAGCATAACTCTTATTGCTACCG GGTTCAAGCCCCAAGAAGAAACCGAAAGCAAACCTGCTCAGGCAAACCAGGTAGCTTCGAAAGATGCAAAGGATGGAATCAACAGGCTACCATTCTCATT TACTGAAGGTGGTTCAATAAAGATTCCCGAGTTCCTCATGAAGAAAGGCCGTTCTCGTTTCCCAAGAGCATAA
AA sequence Show only first row Show all	>Lus10021367 pacid=23178258 polypeptide=Lus10021367 locus=Lus10021367.g ID=Lus10021367.BGIv1.0 annot-version=v1.0 MACVSPYCTPSDTRNTAGMLTVLGGRTSIENHLHLGRANGFLKLSDEKNRFLRASQKLNYPFVRCSSNSHRLSPYHGKETFLDLHPEVSLLRGEGNDVVS SPRRKDTLPCGDMTDDSLDYQTSSSDYVGAKIKVVGVGGGGSNAVNRMIESSMKGVEFWIVNTDIQAIRISPLDPENRLQIGKELTKGLGAGGKPEIGTK AANESKESIEAALFGADMVFVTAGMGGGTGTGGAPVIAGIAKEMGILTVGIVTTPFSFEGRRRTIQALEGTAALRENVDTLIVIPNDKLLTAVNKSTPVT EAFNLADDILRQGVRGISDIITIPGLVNVDFADVRSIMTDAGSSLLGIGTATGQTRARDAALNAIQSPLLDIGIERATGIVWNITGGKDLTLFEVNAAAE VIYDLVDPTANLIFGAVIDPTFEDQVSITLIATGFKPQEETESKPAQANQVASKDAKDGINRLPFSFTEGGSIKIPEFLMKKGRSRFPRA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10021367 [exp]	0	1
AT5G28750			Bacterial sec-independent tran...		Lus10006588 [exp]	4.2	0.8721
AT1G10522			unknown protein		Lus10030655 [exp]	5.3	0.9004
AT4G03150			unknown protein		Lus10005929 [exp]	9.0	0.8791
AT2G36250		ATFTSZ2-1, FTSZ...	Tubulin/FtsZ family protein (....		Lus10017047 [exp]	16.1	0.8385
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	19.0	0.8889
AT4G14385			unknown protein		Lus10021187 [exp]	19.8	0.8503
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	26.4	0.8387
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10012456 [exp]	27.5	0.8385
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	29.0	0.8726
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	30.1	0.8746

Compare expression of checked genes

Lus10021367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.