Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16710 178 / 2e-56 Iron-sulphur cluster biosynthesis family protein (.1.2.3) AT2G36260 114 / 7e-32 Iron-sulphur cluster biosynthesis family protein (.1) AT1G10500 54 / 1e-08 ATCPISCA chloroplast-localized ISCA-like protein (.1) AT5G03905 41 / 0.0003 Iron-sulphur cluster biosynthesis family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017048 [exp] 130 / 2e-37 AT2G16710 220 / 5e-75 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Lus10020827 [exp] 56 / 2e-09 AT1G10500 216 / 1e-72 chloroplast-localized ISCA-like protein (.1) Lus10012683 [exp] 56 / 2e-09 AT1G10500 218 / 2e-73 chloroplast-localized ISCA-like protein (.1) Lus10014201 [exp] 43 / 5e-05 AT5G03905 204 / 2e-68 Iron-sulphur cluster biosynthesis family protein (.1) Lus10022714 [exp] 43 / 8e-05 AT5G03905 201 / 3e-67 Iron-sulphur cluster biosynthesis family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G020400 [exp] 144 / 5e-43 AT2G16710 197 / 5e-66 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.010G238800 [exp] 144 / 6e-43 AT2G16710 211 / 2e-71 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.005G085400 [exp] 56 / 2e-09 AT1G10500 227 / 9e-77 chloroplast-localized ISCA-like protein (.1) Potri.007G079600 [exp] 56 / 2e-09 AT1G10500 210 / 5e-70 chloroplast-localized ISCA-like protein (.1) Potri.006G084300 [exp] 43 / 4e-05 AT5G03905 199 / 2e-66 Iron-sulphur cluster biosynthesis family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01521 [flax] [poplar] Fe-S_biosyn Iron-sulphur cluster biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10021368 pacid=23178267 polypeptide=Lus10021368 locus=Lus10021368.g ID=Lus10021368.BGIv1.0 annot-version=v1.0 ATGGAGAAGCAGAGATGTTCAAAGCCCATTAAGTTTGAAAGAAGTCACCAGAACCAACCGTTGCTTCTGGATCTCGGCCAGGAGCAGTCTTCTTCCACGC GCCTCCGACCACCAGCATTTCTCTTTACCGAAGGTGGTGGATTAAATTTACGGATTAGTCCCTGCGTAGATAAAACGAATTTCCCGTTTCTGTCGTCTTT AGTTGGAGGCAAAATCGGGATACGATCATTTTCTTTCTTCCGACCACCACACATGGCTTCTAAATTAGCAGGAGCTGCGCAGAAGATCTCCCCCGCCATG AGGCGGCAGGCCTTAACGTTAACCGACGCGGCTGCGTCCAGAGTCCGCCATCTCTTGCAGCAACGCCAGAGGCCTTTCCTCCGCCTCGGCGTCAAGGCTC GCGGTTGCAATGGCTTGTCCTACACCCTCAATTACGCAGCCACATGGAGTTCTATGACAATATCATGTTGGCTTAGGCCAGGGGCAGATATCAAAAGAGC GCAATGCTCTTCCTGGGCTGTTTCATGGAAAATGAAACTAAAAAATTCATTGTCCGCCAAGCAGTCTAGGCAAATGAATCCATCTTTCCGTGGGTTTTAT CGCTCCGATTCAACAGATGAGAAGGGGAAATTTGATGAACTGGTTGAAGAGAAGGGTGTGATGGTATTGATCGATCCAAAAGCTCTCATGCATGTAATTG GAACCAAGATGGACTTTGTTGACGACAAACTAAGGTCTGAATTCGTATTTATAAACCCAAACTCTGAAGGGCAGTGCGGTTGTGGTGAATCTTTCATGAC TACGTCAACAAGCAGTACTGCTAAACAAGGCAGCAGCAGATGA
AA sequence Show only first row Show all	>Lus10021368 pacid=23178267 polypeptide=Lus10021368 locus=Lus10021368.g ID=Lus10021368.BGIv1.0 annot-version=v1.0 MEKQRCSKPIKFERSHQNQPLLLDLGQEQSSSTRLRPPAFLFTEGGGLNLRISPCVDKTNFPFLSSLVGGKIGIRSFSFFRPPHMASKLAGAAQKISPAM RRQALTLTDAAASRVRHLLQQRQRPFLRLGVKARGCNGLSYTLNYAATWSSMTISCWLRPGADIKRAQCSSWAVSWKMKLKNSLSAKQSRQMNPSFRGFY RSDSTDEKGKFDELVEEKGVMVLIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSEGQCGCGESFMTTSTSSTAKQGSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10021368 [exp]	0	1
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10000044 [exp]	2.6	0.7835
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10007886 [exp]	7.4	0.7392
AT3G02910			AIG2-like (avirulence induced ...		Lus10018276 [exp]	8.9	0.7520
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10035322 [exp]	15.1	0.7447
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10020302 [exp]	16.1	0.7433
AT1G67350			unknown protein		Lus10015785 [exp]	19.6	0.7346
AT5G53650			unknown protein		Lus10032946 [exp]	21.1	0.7191
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10010328 [exp]	21.2	0.7383
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10016977 [exp]	26.5	0.7143
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10005316 [exp]	32.6	0.6250

Compare expression of checked genes

Lus10021368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.