Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36270 318 / 1e-105 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G44460 197 / 5e-60 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56850 171 / 3e-50 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 137 / 8e-38 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G49720 126 / 1e-32 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G19290 124 / 2e-31 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT4G34000 112 / 2e-27 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 104 / 2e-24 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT5G44080 83 / 1e-17 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G42910 78 / 9e-16 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017049 [exp] 634 / 0 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 347 / 6e-118 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014194 [exp] 198 / 2e-59 AT2G36270 342 / 2e-114 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028889 [exp] 166 / 4e-48 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 135 / 9e-37 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10002399 [exp] 130 / 4e-34 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10008928 [exp] 111 / 5e-29 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10009755 [exp] 111 / 7e-27 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10014066 [exp] 109 / 2e-26 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083000 [exp] 205 / 2e-62 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G164500 [exp] 189 / 1e-56 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.008G010800 [exp] 146 / 9e-41 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.014G028200 [exp] 120 / 3e-30 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.002G125400 [exp] 120 / 3e-30 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.016G024000 [exp] 112 / 2e-28 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.009G101200 [exp] 115 / 3e-28 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.001G220700 [exp] 111 / 4e-28 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 112 / 5e-28 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.004G140600 [exp] 113 / 1e-27 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10021369 pacid=23178154 polypeptide=Lus10021369 locus=Lus10021369.g ID=Lus10021369.BGIv1.0 annot-version=v1.0 ATGGTTGCAACGCTCCCTGATCAAGACATGAACTCACAAGGGGATCAGGTGGATTCGCCATTGCAGCAGCTCAATCACCAATCAAATAAGAACCAACCAT CCACCACCCCACTGGGAAGGCAGTCCTCAATTTACTCCCTCACGCTCGATGAATTCCAGCACACTCTCTGCGAAGGCGGCAAGAATTTCGGTTCAATGAA CATGGACGAGTTCATCAACAGCATTTGGACCGCCGAGGAAAACCAGGGCGCCGGTCACACTTCGAATTCCGCCACTCCGGTTGTTAATAACCACCATTCT GGTCGAGACACTGCCAACCCTGCAGGTTCGGGAATCTCCAAGCAGCCGAGCCTGCCGCGGCAGGGGTCACTCACCCTGCCGGAGAAGCTATGCCGGAAGA CGGTGGACGAGGTGTGGTCGGAGATTCACAACGGCAGAGGGAGCAGATCAGGGCAGCGAAAGAGCAGCGATGCAGCAACGAATTCTGGAGCTGACATGCA AAATGCCGGTTCTGTCCCTCGGCAGCCGACGTTTGGGGAGATGACGCTTGAGGATTTTCTTGTCAAGGCAGGGGTAGTCAGGGGACAACAACAACAAGGT GGTGGTGGATCCTCCATTGCGGCCGCATCGATTCCGCCTGCACCTCCACAGTACAGCAGTGTGTACCAGAACCCCGTTGCTGCTTACCAGTCAATTCTTC CCCACGTGCAGCCAGGTGATGTTTATGGCACCAGCGGGGTAGGATACGCGGTGGTGAGACCGAATAGTCCTGTGTCGTCGGATGGAATGTTGGGGAATAT GGATGGGGTAGGGAATCAGTATGGGATGGATATGGGTGGGCTGAGGGGGCGTAAGAGGGTGATCGATGGGCCGGTGGAGAAGGTCGTGGAGCGAAGGCAG AGGCGGATGATCAAGAATCGAGAGTCCGCGGCCAGGTCTCGAGCAAGGAAGCAGGCGTACACAGTTGAACTAGAAGCAGAACTGAACCAGTTGAAAGAAG AAAACAACCAACTCAAGCAGGCACTGGTTGAGCTGGAAAGGAAGCGAAAGCAGAAGAATGTCGAGGAAGCGAGAACGCGGGGACCGTCAAAGGCGCAGAA GGCGAGGGAGAATCTGAGGCTGATGAGAAGGAACTTGAGCTGTCCATTATGA
AA sequence Show only first row Show all	>Lus10021369 pacid=23178154 polypeptide=Lus10021369 locus=Lus10021369.g ID=Lus10021369.BGIv1.0 annot-version=v1.0 MVATLPDQDMNSQGDQVDSPLQQLNHQSNKNQPSTTPLGRQSSIYSLTLDEFQHTLCEGGKNFGSMNMDEFINSIWTAEENQGAGHTSNSATPVVNNHHS GRDTANPAGSGISKQPSLPRQGSLTLPEKLCRKTVDEVWSEIHNGRGSRSGQRKSSDAATNSGADMQNAGSVPRQPTFGEMTLEDFLVKAGVVRGQQQQG GGGSSIAAASIPPAPPQYSSVYQNPVAAYQSILPHVQPGDVYGTSGVGYAVVRPNSPVSSDGMLGNMDGVGNQYGMDMGGLRGRKRVIDGPVEKVVERRQ RRMIKNRESAARSRARKQAYTVELEAELNQLKEENNQLKQALVELERKRKQKNVEEARTRGPSKAQKARENLRLMRRNLSCPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10021369 [exp]	0	1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	4.5	0.9526
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10040881 [exp]	6.0	0.9522
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	13.6	0.9530
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	20.2	0.9396
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10017049 [exp]	22.0	0.9251
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10037995 [exp]	24.2	0.8513
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	27.6	0.9485
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	27.7	0.9517
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	30.0	0.9496
AT4G35150			O-methyltransferase family pro...		Lus10033655 [exp]	36.2	0.9480

Compare expression of checked genes

Lus10021369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.