Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08950 384 / 2e-134 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT1G35140 372 / 8e-130 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT5G64260 332 / 9e-114 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT5G09440 281 / 2e-94 EXL4 EXORDIUM like 4 (.1) AT3G02970 152 / 1e-43 EXL6 EXORDIUM like 6 (.1) AT5G51550 148 / 5e-42 EXL3 EXORDIUM like 3 (.1) AT2G35150 142 / 1e-39 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT2G17230 126 / 3e-33 EXL5 EXORDIUM like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017050 [exp] 549 / 0 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 312 / 6e-106 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10036484 [exp] 233 / 3e-75 AT5G64260 301 / 2e-102 EXORDIUM like 2 (.1) Lus10013789 [exp] 182 / 3e-55 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1) Lus10039143 [exp] 177 / 2e-53 AT5G64260 202 / 1e-63 EXORDIUM like 2 (.1) Lus10031130 [exp] 150 / 8e-43 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10018314 [exp] 139 / 2e-38 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10031709 [exp] 121 / 2e-32 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1) Lus10013834 [exp] 122 / 1e-31 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G163700 [exp] 438 / 2e-155 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163600 [exp] 437 / 3e-155 AT4G08950 438 / 1e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163500 [exp] 436 / 6e-155 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.002G098800 [exp] 436 / 1e-154 AT4G08950 430 / 1e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163300 [exp] 435 / 2e-154 AT4G08950 436 / 8e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.002G098600 [exp] 405 / 1e-142 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163000 [exp] 356 / 2e-123 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.001G311700 [exp] 320 / 3e-109 AT5G64260 444 / 2e-158 EXORDIUM like 2 (.1) Potri.017G051700 [exp] 318 / 2e-108 AT5G64260 439 / 2e-156 EXORDIUM like 2 (.1) Potri.002G098700 [exp] 257 / 3e-85 AT4G08950 256 / 2e-85 EXORDIUM, Phosphate-responsive 1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [flax] [poplar] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Lus10021370 pacid=23178231 polypeptide=Lus10021370 locus=Lus10021370.g ID=Lus10021370.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTTCTTCCACGCTAATCAACCTCATTCTCCTCTCCATTCTCCTCCACCTCGCCTCCTGCTCCGCCAGGATGCTAATCGACGACGAATCCC AAAACATGGCGTTTCAGTACCACAACGGACCTCTCCTCACCGGAAAAATCTCCATCAATCTCATCTGGTACGGAAAATTCTCCCCGTCCCAGCGAGCCAT CGTCTCCGATTTCGTCGCTTCCCTCTCTTCCGCTAACCACAAAAGCAACCAGGCTGCTTCTGTACAGAGCTGGTTCAAATCAATCGACAAATTCTACCAC CACCTCCCCAAATCTCCCACCATCAAATCCTCCTCCTCTCCTCTGCTTCTCTCATCCGGAACTCAGATCCACGACGACACCTACTCGCTGGGGAAATCTC TCTCCTCCAAACAAATCGTGAAGCTAGCTTCCATGGGCGCACAATCCAACGCTATCAACGTCGTCCTGACGTCATCCGACGTCGCAGTGGAAGGATTCTG CTCCAGTAAGTGCGGCACTCACGGATCTTCCCCAGGGAAGAAGATGACAACGAGCAAAAAGGTTCCCAAATTCGCTTACATTTGGGTGGGGAACTCGGAG ACTCAGTGCCCGGGTCAATGCGCGTGGCCATTCCACCAGCCGATTTACGGACCGCAGTCGGCTCCTTTGGTGGCACCCAACAACGATGTGGGAGTCGACG GGATGATCATCAACCTCGCTACTCTGTTGGCCGGGACGGCGACCAACCCGTTTGGAAATGGCTACTTCCAGGGGGATAAAGAAGCTCCGTTGGAGGCTGC GTCTGCTTGTCCTGGCGTTTATGGGAAAGGAGCTTACCCTGGATATGCTGGGGATTTGCTTGTGGATTCGACTACTGGAGGTAGCTACAATGCGAATGGG GTTAATGGCAGGAAGTACTTGCTGCCTGCTCTGTTTGATCCTGCTTCTTCCACTTGCTCCACTCTTGTCTAA
AA sequence Show only first row Show all	>Lus10021370 pacid=23178231 polypeptide=Lus10021370 locus=Lus10021370.g ID=Lus10021370.BGIv1.0 annot-version=v1.0 MAASSSTLINLILLSILLHLASCSARMLIDDESQNMAFQYHNGPLLTGKISINLIWYGKFSPSQRAIVSDFVASLSSANHKSNQAASVQSWFKSIDKFYH HLPKSPTIKSSSSPLLLSSGTQIHDDTYSLGKSLSSKQIVKLASMGAQSNAINVVLTSSDVAVEGFCSSKCGTHGSSPGKKMTTSKKVPKFAYIWVGNSE TQCPGQCAWPFHQPIYGPQSAPLVAPNNDVGVDGMIINLATLLAGTATNPFGNGYFQGDKEAPLEAASACPGVYGKGAYPGYAGDLLVDSTTGGSYNANG VNGRKYLLPALFDPASSTCSTLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	0	1
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	1.0	0.9629
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007349 [exp]	3.5	0.9036
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	4.9	0.9011
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	6.2	0.9117
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007348 [exp]	7.7	0.8943
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026609 [exp]	11.0	0.8443
AT3G54000			unknown protein		Lus10021105 [exp]	12.0	0.7894
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	12.0	0.8837
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015897 [exp]	12.1	0.8701
AT3G19680			Protein of unknown function (D...		Lus10020509 [exp]	13.3	0.8616

Compare expression of checked genes

Lus10021370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.