Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 445 / 1e-156 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 444 / 7e-156 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 426 / 1e-149 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 408 / 5e-142 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 392 / 4e-136 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 389 / 2e-134 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 340 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 258 / 1e-83 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 257 / 3e-83 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03230 253 / 1e-81 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017051 [exp] 707 / 0 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10022722 [exp] 551 / 0 AT3G48410 429 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10014191 [exp] 526 / 0 AT3G48410 412 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 428 / 3e-148 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 423 / 4e-148 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 418 / 4e-146 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 415 / 8e-145 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 415 / 9e-145 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 409 / 2e-142 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 460 / 1e-162 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 453 / 6e-160 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 436 / 2e-153 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 435 / 3e-152 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 426 / 4e-149 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 373 / 1e-128 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 358 / 1e-122 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 302 / 6e-101 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 125 / 1e-31 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 120 / 1e-29 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10021371 pacid=23178297 polypeptide=Lus10021371 locus=Lus10021371.g ID=Lus10021371.BGIv1.0 annot-version=v1.0 ATGGCGGCAGGAGTGAGCAGGAAGATATCTGCAGCCTCCGCAAGGTCTCACACTAGAGCTAGAAGAGCTAAGCAAACCGCCGTTCCTACTCTTCCGTCAG GCATCTTTCCTACAGTGCTTGTGGTGTTGCTGGTTGGGGTGTTGGCTTGGGGTTATCAAGCAATCCAACCACCTCCACCCAAGATATGTGGTTCACCTGG CGGACCACTCGTAACGGCACCAAGAATCAAGCTTCGGGACGGGAGGCATTTGGCTTATCGAGAACATGGCGTGTCAAAGGATGTTGCCAAGATCAAAATT GTCTTCATCCATGGTTTTGATGTTTGCAGGCTTGATGATGTCATTGCTAACTACACCTCTCCGGAACTTGTCAAGGAGTTAGGGATCTATTTCGTGTCAT ACGACAGGCCTGGCTACGGAGAGAGCGATCCTGATCCATCAAGATCAGTAAAAAGCCAGGCTTTGGACGTGGAAGAGCTTGCTGATCAATTAGGACTGGG ATCTAAGTTCTATCTAATTGGTTATTCACTTGGTGGTCAGTTGACATGGGGCTGCCTGAAGTACATCCCTCACAGATGCTTAATCCCCGTTGCAAACAGG CTAGCAGGTGTGACTCTGTTGACCCCAGCTACCAACTACTGGTGGCCTGGGTTTCCGTCCAACTTATCTAGTGAAGCTTTGAGCAAACAAGCACCTTCGG ATTATTGGTCGCTTCATGTGGCTCATTATGCTCCCTGGTTAACTCACTGGTGGAATACCCAGAAATGGTTCCCAGTTCTTGGAGTCATCAGTAAAAGCCC TCATATTTGTTCCCGCCAAGACAAGGAAATTGTTGATCAGCTTGTAGCTAAAGGAAATAATAACTTGGTGCATACACGGCAGCAAGGAGAATACGAGTCG ATCCATCGCGACATGAACATAGGATTCGGCACCTGGGAGTTCGATCCTATGGATCTTGAGAACCCGTTTCCCAACAATGAGACCCATGTTCATATGTGGC AAGGAGATGAAGACTATCTTGTTGCAGCTACACTTCAGCGGTACATCGCAGAGCGGCTTCCCTGGATTAGCTACCATGAGCTGGCAGGTTCTGGACATTT CTTCCCTTATCTTGATGGAATGGCTGATACCATTGTCAAGACTATGCTAGCTAGGAAGTTTTGA
AA sequence Show only first row Show all	>Lus10021371 pacid=23178297 polypeptide=Lus10021371 locus=Lus10021371.g ID=Lus10021371.BGIv1.0 annot-version=v1.0 MAAGVSRKISAASARSHTRARRAKQTAVPTLPSGIFPTVLVVLLVGVLAWGYQAIQPPPPKICGSPGGPLVTAPRIKLRDGRHLAYREHGVSKDVAKIKI VFIHGFDVCRLDDVIANYTSPELVKELGIYFVSYDRPGYGESDPDPSRSVKSQALDVEELADQLGLGSKFYLIGYSLGGQLTWGCLKYIPHRCLIPVANR LAGVTLLTPATNYWWPGFPSNLSSEALSKQAPSDYWSLHVAHYAPWLTHWWNTQKWFPVLGVISKSPHICSRQDKEIVDQLVAKGNNNLVHTRQQGEYES IHRDMNIGFGTWEFDPMDLENPFPNNETHVHMWQGDEDYLVAATLQRYIAERLPWISYHELAGSGHFFPYLDGMADTIVKTMLARKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10021371 [exp]	0	1
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	9.4	0.8374
AT5G43020			Leucine-rich repeat protein ki...		Lus10018733 [exp]	16.5	0.8316
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10035400 [exp]	17.0	0.8197
AT5G45590			Ribosomal protein L35 (.1)		Lus10010409 [exp]	18.3	0.8343
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10023754 [exp]	23.1	0.8303
AT1G66740		AtSP7, SGA2, AS...	ANTI- SILENCING FUNCTION 1A, A...		Lus10017622 [exp]	29.9	0.8248
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10033922 [exp]	30.4	0.7873
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	36.7	0.8275
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10033131 [exp]	41.6	0.8052
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10030378 [exp]	45.1	0.8249

Compare expression of checked genes

Lus10021371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.