Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03840 268 / 7e-93 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT2G27550 253 / 5e-87 ATC centroradialis (.1) AT5G62040 222 / 9e-75 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G65480 186 / 1e-60 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G18100 176 / 1e-56 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 174 / 7e-56 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043385 [exp] 251 / 2e-86 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10004886 [exp] 250 / 1e-85 AT2G27550 267 / 2e-92 centroradialis (.1) Lus10020600 [exp] 246 / 5e-84 AT2G27550 263 / 3e-91 centroradialis (.1) Lus10027442 [exp] 236 / 3e-80 AT5G62040 248 / 4e-85 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10005753 [exp] 233 / 6e-79 AT5G62040 241 / 5e-82 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10013532 [exp] 207 / 8e-69 AT1G65480 278 / 6e-97 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004452 [exp] 206 / 2e-65 AT1G65480 270 / 1e-90 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004884 [exp] 198 / 3e-65 AT2G27550 218 / 3e-73 centroradialis (.1) Lus10019541 [exp] 184 / 7e-60 AT2G27550 188 / 5e-62 centroradialis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165100 [exp] 266 / 3e-92 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.004G203900 [exp] 264 / 2e-91 AT2G27550 286 / 4e-100 centroradialis (.1) Potri.008G077700 [exp] 201 / 9e-67 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179700 [exp] 201 / 2e-66 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G041000 [exp] 173 / 2e-55 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G141300 [exp] 167 / 8e-54 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179900 [exp] 102 / 1e-28 AT1G65480 132 / 6e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179801 [exp] 101 / 3e-28 AT1G65480 133 / 3e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10021372 pacid=23178209 polypeptide=Lus10021372 locus=Lus10021372.g ID=Lus10021372.BGIv1.0 annot-version=v1.0 ATGGCAGCAGGTGCAAGAGCTTTGGAGCCGTTGATAGTGGGGAGAGTGATAGGGGATGTGACGGACCAATTCATGCCGTCGACGAACATGACGGTTGTGT ACGCAAACAACAAAGTTGTCTCCAACGGCCATGAGTTCTTCCCTTCCGCCGTCTCCTCCAGGCCCCGCGTCGACGTCCACGGCGGCGACCTCAGAACTTT CTTCACCCTCGTGATGACGGATCCGGATGTTCCAGGGCCGAGTGATCCTTTCCTTAGGGAGCACCTCCACTGGATAGTGACAGACATTCCAGGAACAACG GACGCTACGTTTGGAACAGAGGTGGTGAGATACGAGATGCCGAGGCCAAACTTAGGGATACACAGGTTCGTCTTCCTACTTTACAGGCAGATCCAGAGGC AGTGTTTAGTGACAAACCCTCCTTCGACAAGGGATTACTTCTGCACGAGAGATTTCGCTCTACTCAACGATCTAGGCCTTCCAGTTGCTGCTGTTTACTT CAACGCTCAGCGTGAAACTGCTGCCAGGCGTCGATGA
AA sequence Show only first row Show all	>Lus10021372 pacid=23178209 polypeptide=Lus10021372 locus=Lus10021372.g ID=Lus10021372.BGIv1.0 annot-version=v1.0 MAAGARALEPLIVGRVIGDVTDQFMPSTNMTVVYANNKVVSNGHEFFPSAVSSRPRVDVHGGDLRTFFTLVMTDPDVPGPSDPFLREHLHWIVTDIPGTT DATFGTEVVRYEMPRPNLGIHRFVFLLYRQIQRQCLVTNPPSTRDYFCTRDFALLNDLGLPVAAVYFNAQRETAARRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03840		TFL-1, TFL1	TERMINAL FLOWER 1, PEBP (phosp...		Lus10021372 [exp]	0	1
AT3G07840			Pectin lyase-like superfamily ...		Lus10003001 [exp]	5.5	0.8450
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	7.7	0.8052
					Lus10038105 [exp]	8.8	0.8040
AT1G52540			Protein kinase superfamily pro...		Lus10031673 [exp]	9.6	0.8246
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	44.4	0.7998
AT3G15280			unknown protein		Lus10005404 [exp]	47.7	0.7294
AT1G62975	bHLH	bHLH125	basic helix-loop-helix (bHLH) ...		Lus10007049 [exp]	55.9	0.7538
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10030272 [exp]	59.9	0.7205
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	60.7	0.7034
AT1G13340			Regulator of Vps4 activity in ...		Lus10017591 [exp]	71.0	0.7105

Compare expression of checked genes

Lus10021372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.