Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017053 [exp] 153 / 3e-49 ND 38 / 2e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021373 pacid=23178216 polypeptide=Lus10021373 locus=Lus10021373.g ID=Lus10021373.BGIv1.0 annot-version=v1.0 ATGACTTCTTCTGCAACTAACGATGGATGCTGTCGAGCTAATTTGACAACCAAGGAGGAAGAGGAGGAGCTGTTCGAGATTGATATCGATGCGGTCCCGT CTCCACGTTACTGGGAAATCAATTGTGGCCGGGCCAGGGTAAACTCCACCGCGCTAAGTTCAGCTGCTGAGGTTGCGCTTTTTGCCAACTGCCTACTCCC AGTCGCTCACGTTTTGTCGGCAGTTCCCATGCCCTTCTCTGCTGTTTCTTCTTCCTCTTTGGCCTGTGATTCTGTTATCTCTCTGGAGGAGCAGCTCCTG CTTTGCAGGCTTCATCGACGTAATTTCCAGATACTCGCTTTTCAGGAGCTTACGGGGCTCAGTGACGAAGACTGA
AA sequence Show only first row Show all	>Lus10021373 pacid=23178216 polypeptide=Lus10021373 locus=Lus10021373.g ID=Lus10021373.BGIv1.0 annot-version=v1.0 MTSSATNDGCCRANLTTKEEEEELFEIDIDAVPSPRYWEINCGRARVNSTALSSAAEVALFANCLLPVAHVLSAVPMPFSAVSSSSLACDSVISLEEQLL LCRLHRRNFQILAFQELTGLSDED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021373 [exp]	0	1
AT4G02830			unknown protein		Lus10042573 [exp]	1.4	0.9751
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	2.4	0.9681
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	2.8	0.9578
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10019711 [exp]	3.5	0.9529
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	3.5	0.9645
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039559 [exp]	4.5	0.9439
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	6.0	0.9395
					Lus10031407 [exp]	7.4	0.9423
AT3G11920			glutaredoxin-related (.1)		Lus10029074 [exp]	7.9	0.9164
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	8.2	0.9365

Compare expression of checked genes

Lus10021373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.