Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36300 353 / 3e-124 Integral membrane Yip1 family protein (.1) AT3G52760 339 / 2e-118 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022723 [exp] 363 / 1e-128 AT3G52760 346 / 8e-122 Integral membrane Yip1 family protein (.1) Lus10014191 [exp] 83 / 3e-18 AT3G48410 412 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1) Lus10017054 [exp] 0 / 1 AT3G52760 315 / 3e-108 Integral membrane Yip1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G152600 [exp] 387 / 1e-137 AT2G36300 365 / 6e-129 Integral membrane Yip1 family protein (.1) Potri.004G190800 [exp] 385 / 5e-137 AT2G36300 367 / 8e-130 Integral membrane Yip1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF04893 [flax] [poplar] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Lus10021374 pacid=23178302 polypeptide=Lus10021374 locus=Lus10021374.g ID=Lus10021374.BGIv1.0 annot-version=v1.0 ATGGCAAGGGAATTCAGCGTGCCGCCCGTCGTCTTCCCATCCGGCACCAATCCCAGCGTCGCCGGTGGAGCCAACATGCAGCAAAGGCGGGTCCCGTCGG CGCCGTTCCAGCCTCCTCGCCCTTCCAACTCAGGAATCCCTTTCATGTCCTTTGACATGGGATCCGCTCCCGCTGCCGCCTACGGCGGGGGCACAATCGG CGGAGGTCCCACTCCCTCCAGCGGTTGTAATTTCGACGACGAAGAGCCTCTCCTCGACGAACTCGGCATCCACCCGGACCAAATCTGGCGGAAGACGAAG TCGATCCTGAATCCTTTCCGCGTCAACTCCGATGTTCACAAGGACTCCGATCTATCCGGCCCGATCTTCTTGTACCTGTCGCTCTGCCTCTTTCAGTTGC TCGCTGGTAAGATCCAATTTGGTGTCATTCTAGGATGGATCGTTGTGTCCTCGATTTTCTTGTACGTCGTCTTCAACATGCTCGCTGGGAGGAACGGGAA CTTGGATCTCCACACTTGTACGGGCGTGGTTGGTTACTGTTTGCTTCCAGTGGTGATCCTATCGGCGATTTCTCTGTTCTTGCCTCAGGGCGCGCCGATC AGGTTCGCTTTCTCCGGTGTCTTCGTGATTTGGGCGACTAGGGCATGCACTAATCTGATGGTGGCAGCTGCCGACGGTGGAGAGGAACACCGTGGATTGA TCGCGTACGCTTGTTTCTTGATTTACTCGTTGTTCTCATTGCTTGTGATATTTTAG
AA sequence Show only first row Show all	>Lus10021374 pacid=23178302 polypeptide=Lus10021374 locus=Lus10021374.g ID=Lus10021374.BGIv1.0 annot-version=v1.0 MAREFSVPPVVFPSGTNPSVAGGANMQQRRVPSAPFQPPRPSNSGIPFMSFDMGSAPAAAYGGGTIGGGPTPSSGCNFDDEEPLLDELGIHPDQIWRKTK SILNPFRVNSDVHKDSDLSGPIFLYLSLCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTGVVGYCLLPVVILSAISLFLPQGAPI RFAFSGVFVIWATRACTNLMVAAADGGEEHRGLIAYACFLIYSLFSLLVIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	0	1
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	1.0	0.9634
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	3.5	0.9353
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031248 [exp]	4.5	0.9383
AT5G03080			Phosphatidic acid phosphatase ...		Lus10019919 [exp]	6.0	0.9299
AT5G03080			Phosphatidic acid phosphatase ...		Lus10026489 [exp]	6.5	0.9206
AT4G22560			unknown protein		Lus10028927 [exp]	8.1	0.9269
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	8.2	0.8746
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	10.4	0.8925
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10040428 [exp]	11.8	0.9140
AT1G65720			unknown protein		Lus10010961 [exp]	12.0	0.9054

Compare expression of checked genes

Lus10021374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.