Plant FIBer expression Database

Lus10021375 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52770 52 / 3e-10 ZPR3 LITTLE ZIPPER 3, protein binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017055
[exp]
111 / 2e-33 AT3G52770 77 / 5e-20 LITTLE ZIPPER 3, protein binding (.1)
Lus10022725
[exp]
48 / 1e-08 AT3G52770 73 / 5e-19 LITTLE ZIPPER 3, protein binding (.1)
Lus10014188
[exp]
47 / 3e-08 AT3G52770 72 / 1e-18 LITTLE ZIPPER 3, protein binding (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G083201
[exp]
79 / 1e-19 AT3G52770 54 / 2e-10 LITTLE ZIPPER 3, protein binding (.1)
Potri.010G237600
[exp]
56 / 6e-12 AT3G52770 49 / 7e-10 LITTLE ZIPPER 3, protein binding (.1)
Potri.008G021766
[exp]
44 / 3e-07 AT3G52770 51 / 1e-10 LITTLE ZIPPER 3, protein binding (.1)
PFAM info
Representative CDS sequence
>Lus10021375 pacid=23178160 polypeptide=Lus10021375 locus=Lus10021375.g ID=Lus10021375.BGIv1.0 annot-version=v1.0
ATGGTCGGTCATCCATTCAAGGCAGGTCTTGATATTCTAAAGGCAATGGAGAGACTGAACTCAAAGCTGTACCTGCAGAACTGCTTCATAATGAAAGAAA
ATGAGAGGCTGCGGAAGAAAGCACAGCTTCTCAACCAGGAGAATCAAGCATTGCTCTCTGAACTCAAACAGAAGCTCTCCAAGGGAAATGCAAAAGGGAA
ATCTTCTCCTAACAACAGTACTATTCCTGACCTCAACCTGGGTGGTTCCAGCTCTTCCCAGAATCATGCCAACTCCAACAGTAACTGA
AA sequence
>Lus10021375 pacid=23178160 polypeptide=Lus10021375 locus=Lus10021375.g ID=Lus10021375.BGIv1.0 annot-version=v1.0
MVGHPFKAGLDILKAMERLNSKLYLQNCFIMKENERLRKKAQLLNQENQALLSELKQKLSKGNAKGKSSPNNSTIPDLNLGGSSSSQNHANSNSN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52770 ZPR3 LITTLE ZIPPER 3, protein bindi... Lus10021375
[exp]
0 1
Lus10035158
[exp]
6.4 0.8905
AT3G52770 ZPR3 LITTLE ZIPPER 3, protein bindi... Lus10017055
[exp]
6.5 0.8068
AT5G03530 ATRABALPHA, AtR... ARABIDOPSIS THALIANA RAB GTPAS... Lus10021507
[exp]
7.7 0.8896
AT5G03530 ATRABALPHA, AtR... ARABIDOPSIS THALIANA RAB GTPAS... Lus10022608
[exp]
9.2 0.8861
AT3G03490 AtPEX19-1, PEX1... peroxin 19-1 (.1) Lus10003813
[exp]
16.4 0.8530
AT1G54400 HSP20-like chaperones superfam... Lus10013655
[exp]
17.1 0.8687
AT5G51410 LUC7 N_terminus domain-contain... Lus10027212
[exp]
20.7 0.7772
AT5G55640 unknown protein Lus10043162
[exp]
21.5 0.7815
AT4G37445 unknown protein Lus10001408
[exp]
25.1 0.8669
AT2G20362 unknown protein Lus10024963
[exp]
26.7 0.8520

Lus10021375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.