Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52780 493 / 1e-174 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52820 455 / 1e-159 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G20500 438 / 6e-153 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52810 402 / 1e-138 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G07130 295 / 8e-96 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT5G34850 266 / 3e-85 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT4G13700 265 / 4e-85 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT1G56360 262 / 8e-84 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 257 / 6e-82 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT2G27190 249 / 9e-79 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017056 [exp] 565 / 0 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10040079 [exp] 449 / 3e-157 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 447 / 2e-156 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10021377 [exp] 436 / 6e-152 AT3G52820 603 / 0.0 purple acid phosphatase 22 (.1) Lus10017057 [exp] 430 / 6e-152 AT3G52780 375 / 1e-129 Purple acid phosphatases superfamily protein (.1.2) Lus10021378 [exp] 446 / 2e-150 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10017059 [exp] 399 / 6e-138 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1) Lus10027710 [exp] 297 / 4e-97 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10039978 [exp] 297 / 1e-96 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138200 [exp] 434 / 9e-152 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 429 / 1e-149 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 429 / 3e-149 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.017G055900 [exp] 295 / 8e-96 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 295 / 4e-95 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.002G243900 [exp] 282 / 2e-90 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.006G063700 [exp] 276 / 4e-89 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 265 / 1e-84 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 261 / 2e-83 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.005G233400 [exp] 253 / 3e-80 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10021376 pacid=23178306 polypeptide=Lus10021376 locus=Lus10021376.g ID=Lus10021376.BGIv1.0 annot-version=v1.0 ATGAGGGTATCTTGGATAACAGAGAACCAAACTCCGGCCACCGTCGATTACGGTACATCTCCTGGAAACTACGTCAGTTCAGCTACAGGAGCTACATCTT CTTATACTTACACTCTCTACACATCTGGCCAAATTCACGACGTCGTCATCGGTCCTCTGAATCCCAGCACCGTTTATTATTACCGTTGCGGCAACAACTC CGCTCGTGAGTTCTCCTTCAAGACCGCCCCCGCTTCTTTCCCGATCAAATTCGCCATAGTCGGTGATTTTGGGCAAACAGAGCATACGGACTCAACCCTG CAACACATCTCCCAATCGAACTACGACATGTTGCTTCTTCCCGGAGACCTGTCGTACGCCGACTTGTGGCAGCCGAAATGGGACTCATTCGGTCGGATAG TGGAGCCGCTGGCTAGCCAACGGCCGTGGATGGTGACACAAGGGAACCACGAGGTGGAGAAAATCCCTCTCATCCATAGAACGCCGTTCACTGCCTACAA CACACGGTGGAGGATGCCATTTGAGGAGAGCGGATCCACTTCCAATCTTTACTACTCGTTTGAAGTGGCCGGAGCCCATGTGGTTATGTTGGGCTCGTAT ACGGACTTTGATCCATCTTCGGTCCAATACAGTTGGCTTCAATCGGATTTAGCCAAGGTTGACCGGAGTAAGACTCCGTGGCTTTTGGTTCTAACACATG CTCCTTGGTATAGCACCAACACAGCACATCAAGGTGAAGCCGAATCTGTTGATATGAAGCAGTCCATGGAGACTCTGCTCTATAATGCTCGAGTTGACGC CGTTTTTACTGGTCATGTCCATGCTTACGAACGCTTCAGTCGAGTTTACAAAGAAAAGCAAGACGATTGTGGTCCGATCCACATCACAATTGGGGATGGC GGGAACCACGAAGGCTTAGCCAAAGATTACATGGATCCACAACCAGGGATTTCGATATTTCGAGAGGCGAGCTTCGGGCATGGACAATTTGAGGTGGTGA ATGCAACCCACGCGCAATGGACATGGCATAGGAACGATGATGGTAACAGTGTTGCGAGCGATTCAACTTGGATCGCCAGTCTTTCTTCCGCTTCAAGTTG CAAACTCTAG
AA sequence Show only first row Show all	>Lus10021376 pacid=23178306 polypeptide=Lus10021376 locus=Lus10021376.g ID=Lus10021376.BGIv1.0 annot-version=v1.0 MRVSWITENQTPATVDYGTSPGNYVSSATGATSSYTYTLYTSGQIHDVVIGPLNPSTVYYYRCGNNSAREFSFKTAPASFPIKFAIVGDFGQTEHTDSTL QHISQSNYDMLLLPGDLSYADLWQPKWDSFGRIVEPLASQRPWMVTQGNHEVEKIPLIHRTPFTAYNTRWRMPFEESGSTSNLYYSFEVAGAHVVMLGSY TDFDPSSVQYSWLQSDLAKVDRSKTPWLLVLTHAPWYSTNTAHQGEAESVDMKQSMETLLYNARVDAVFTGHVHAYERFSRVYKEKQDDCGPIHITIGDG GNHEGLAKDYMDPQPGISIFREASFGHGQFEVVNATHAQWTWHRNDDGNSVASDSTWIASLSSASSCKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10021376 [exp]	0	1
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	9.1	0.9215
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	12.2	0.8568
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	12.4	0.9072
AT3G51870			Mitochondrial substrate carrie...		Lus10027789 [exp]	16.6	0.8879
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	16.6	0.9025
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10024960 [exp]	18.5	0.8753
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	18.7	0.8723
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10038158 [exp]	18.8	0.8632
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001355 [exp]	19.0	0.8804
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	19.4	0.8874

Compare expression of checked genes

Lus10021376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.