Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52820 603 / 0 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 545 / 0 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52780 499 / 8e-176 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 488 / 1e-171 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT5G34850 300 / 3e-97 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT1G56360 285 / 1e-91 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 284 / 4e-91 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT4G13700 279 / 3e-89 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G07130 278 / 7e-88 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G27190 275 / 1e-87 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021378 [exp] 582 / 0 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10017059 [exp] 518 / 0 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1) Lus10040079 [exp] 503 / 3e-177 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 498 / 4e-175 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10017056 [exp] 477 / 6e-167 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021376 [exp] 471 / 2e-165 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10017057 [exp] 320 / 3e-107 AT3G52780 375 / 1e-129 Purple acid phosphatases superfamily protein (.1.2) Lus10039978 [exp] 309 / 4e-100 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10027710 [exp] 303 / 2e-98 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030700 [exp] 604 / 0 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.001G423700 [exp] 490 / 2e-172 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.011G138200 [exp] 488 / 1e-171 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.006G063700 [exp] 296 / 2e-95 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.005G233400 [exp] 292 / 2e-94 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.003G176000 [exp] 294 / 8e-94 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.004G160100 [exp] 287 / 5e-92 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.017G055900 [exp] 286 / 3e-91 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G029300 [exp] 284 / 6e-91 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G024800 [exp] 281 / 4e-90 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10021377 pacid=23178177 polypeptide=Lus10021377 locus=Lus10021377.g ID=Lus10021377.BGIv1.0 annot-version=v1.0 ATGGAGAAACTCTACCCATTCTTTCTCCTCTTCCTATTATTCCTCGCCGCCGGTGCGGCATCCGACGACAAACATTTCTCCCGGCCGGCCGCTGGGACCG TCGTCCACACTCCCCACGACAAGTCAGATTCGCACCCCCAGCAGGTCCACGTGTCGTTGGCAGGGAAAAACCACGCGAGGGTGACGTGGATCGTGAAAGA CAGGCACGTGGCCTCGTCTGTGGGTTACGGGACGGTGTCAGGGAAGTATGACGTGGCGGGGGGCGGAGATCCGATAAAGTACCGCTACTTCTTCTACGAG TCAGGGTACATCCACCACGTGAAGATTGGGCCGCTGAAGCCCAATACGGTTTATTACTATCAGTGCGGCGGGCGTGGGCCGGAGTTCTCGTTCAGGACTC CTCCGGCTACTCTGCCCTTCGAATTCGCCATTGCCGGTGACCTTGGTCAAACAGAATGGACAAAGTCAACCTTAGAGCACATAAACAGCAGCGACTACGA TGTGTTCCTACTCCCAGGAGACCTCTCCTACGCAGACACCAAACAGCCTCTCTGGGACTCATTCGGCCGCTTCGTCGAGCCTTACGCCACCCACCGCCCT TGGATGGTCACCCAAGGCAACCACGAGCTCGAGTACTTCCCCATCCTCATGCCTCACCCCTTCCGAGCCTACAACGCCAGATGGCTCATGCCTTACCAAG AGAGCGGCTCCACTTCCAATCTCTACTACTCCTTCGACGTGGCTTCCCAATCCGTCCATGTCATCATGCTCGGATCCTACGCCGATTTCGACTCCCACTC GGATCAGTACAAGTGGCTCGCGACTGACCTGTCCAAAGTGGACAGGAAAGCCACGCCGTGGGTTTTCGTGTTGCTTCACGCGCCGTGGTACAACACGAAC GAGGCGCATCAGGGGGAAGGCGAGAGCATGAGGAAAGAAATGGAGAAGCTTCTCTATGACGCTAGAGTCGACGTCGTTTTCGCTGGACATGTTCACGCTT ACGAACGCTTCAAAAGAATATATGATAATAAGGCGGATCCATGTGGGCCGATGTACATAACAATTGGGGACGGTGGCAATCGGGAAGGACTTGCATCATC GTATAAGAAGCCTGTTTCGGATCTATCGATGTACCGAGAGGCTAGCTTTGGACATGGAAGGCTGAGGATAGTTGACGAGAAGCGAGCTCATTGGTCATGG CATCGAAACAATGACACCAACTCGGTGGTTGCGGATGATGTGTGGCTAGTTGGCTTAGCCTCCAAGAAAGAGTGCTGGAGCAAGGAGGGTGGACATGGAT CTGGCGGGGAGGGATCCACTCGAGTTGAGATAGATGAGCTTTAG
AA sequence Show only first row Show all	>Lus10021377 pacid=23178177 polypeptide=Lus10021377 locus=Lus10021377.g ID=Lus10021377.BGIv1.0 annot-version=v1.0 MEKLYPFFLLFLLFLAAGAASDDKHFSRPAAGTVVHTPHDKSDSHPQQVHVSLAGKNHARVTWIVKDRHVASSVGYGTVSGKYDVAGGGDPIKYRYFFYE SGYIHHVKIGPLKPNTVYYYQCGGRGPEFSFRTPPATLPFEFAIAGDLGQTEWTKSTLEHINSSDYDVFLLPGDLSYADTKQPLWDSFGRFVEPYATHRP WMVTQGNHELEYFPILMPHPFRAYNARWLMPYQESGSTSNLYYSFDVASQSVHVIMLGSYADFDSHSDQYKWLATDLSKVDRKATPWVFVLLHAPWYNTN EAHQGEGESMRKEMEKLLYDARVDVVFAGHVHAYERFKRIYDNKADPCGPMYITIGDGGNREGLASSYKKPVSDLSMYREASFGHGRLRIVDEKRAHWSW HRNNDTNSVVADDVWLVGLASKKECWSKEGGHGSGGEGSTRVEIDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10021377 [exp]	0	1
					Lus10033740 [exp]	5.5	0.7197
AT3G61180			RING/U-box superfamily protein...		Lus10036569 [exp]	5.7	0.7415
AT3G10680			HSP20-like chaperones superfam...		Lus10034875 [exp]	10.7	0.7488
AT1G16840			unknown protein		Lus10034821 [exp]	11.2	0.6765
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	18.5	0.7383
AT1G16840			unknown protein		Lus10033369 [exp]	18.7	0.7045
AT1G49470			Family of unknown function (DU...		Lus10023842 [exp]	29.1	0.7373
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	30.4	0.6901
AT1G78620			Protein of unknown function DU...		Lus10005554 [exp]	34.6	0.6665
AT1G48320			Thioesterase superfamily prote...		Lus10006220 [exp]	41.6	0.6843

Compare expression of checked genes

Lus10021377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.