Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52820 598 / 0 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 541 / 0 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G20500 484 / 3e-164 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52780 473 / 7e-160 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT5G34850 298 / 4e-92 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT4G13700 290 / 4e-89 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT1G56360 287 / 6e-88 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT3G07130 287 / 3e-87 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT4G36350 281 / 2e-85 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT2G27190 268 / 1e-80 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021377 [exp] 582 / 0 AT3G52820 603 / 0.0 purple acid phosphatase 22 (.1) Lus10017059 [exp] 546 / 0 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1) Lus10019625 [exp] 493 / 2e-167 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10040079 [exp] 492 / 4e-167 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10017056 [exp] 484 / 7e-164 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021376 [exp] 470 / 1e-159 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10017057 [exp] 312 / 2e-99 AT3G52780 375 / 1e-129 Purple acid phosphatases superfamily protein (.1.2) Lus10039978 [exp] 307 / 1e-94 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10027710 [exp] 301 / 9e-93 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030700 [exp] 593 / 0 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.011G138200 [exp] 490 / 3e-166 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 486 / 9e-165 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G176000 [exp] 301 / 8e-92 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.017G055900 [exp] 300 / 8e-92 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 293 / 4e-89 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.006G063700 [exp] 290 / 6e-89 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 284 / 1e-86 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.005G233400 [exp] 280 / 3e-85 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G123700 [exp] 280 / 6e-85 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10021378 pacid=23178252 polypeptide=Lus10021378 locus=Lus10021378.g ID=Lus10021378.BGIv1.0 annot-version=v1.0 ATGGGGAGATCCCTCCCTGAACTTAAGTTGTATCAACTCCTGCTACTATCAATCGTCTTTCTTGTCTCCCAATATGCTGCATCAAATGAGTCTGACGATG AGTTTTCTCAGCACATTTCTCACAATGCTGTCTTCATTCCTCACTGTGTATCGGCATCAGAACCTCAACAGGTGCATATATCCATGGTGGGGAAAGATCA CATCAAAGTTACATGGATCACAGATGATGAACAAGTGAATTCCACTGTGGAATACGGAAAGGAACCAGGCAGATATAATTCCAAGGCGAATGGGGAGCAC ACGTCATATAAGTTCTTCTCGTACACCTCAGGGAAGATACACCATGTGAAGATTGGACCTCTGGAGCCAGACACAACCTATTACTACCAATGTGGAGGAG TCGGCCCTGAGTTCTCCATGAAGACTCCTCCTTCAACTTATCCAATTGAGTTCGCTATTGTTGGTGACCTTGGCCAAACCGAGTGGACAAAGTCTACTTT GGAGCGTCTCAACAGTAGCAACTATGACATGTTCTTACTACCAGGCGATTTGTCCTACGCAGACGGGAAGCAACCACTCTGGGACTCATTTGGCCGTCTA GTGGAGCCGTACGCCAGCCAACGGCCATGGATGGTGACAGAAGGAAACCATGAGATTGAGAGCATACCTGTCCTAAACCCTGAAGGCTTCTTGGCCTACA ATGCCAGATGGCCCATGCCATACAAAGAAAGCGGCTCCTCCTCAAACTTGTATTACTCATTTGAGGTTGCAGGTTGCCACATCATCATGCTAGGTTCCTA CGCCGATTTCGAAGCTGGCTCGAACCAGTATAAGTGGCTGGTTGCTGACTTGGCCTGTGTAGACAGGAAGACAACGCCATGGCTTATTGTGTTGTTACAT GCTCCGTGGTACAACACAAATCACGCACATCAGGGAGATGGAGAGCACATGAGGAGATCCATGGAAGATTTGCTCTACAATGCACGAGTGGATATAGTTT TTGCAGGCCACGTTCATGCCTATGAAAGATTCACCCGGATTTACAACAACCGGGCTGACCCGGCTGGCCCAGTGTACATCACAATTGGAGATGGTGGAAA CCATGAAGGGCTCGCATTAACGTTCAAGAGTCCGCCTTCCCAGCTATCCTTGTACCGGGAAGCAAGCTTCGGACATGGAAGACTCAGGATTGTCGACGGT AAAAGAGCTCACTGGTCATGGCATAGGAACGATGATTCCAGCTCCGAAGTCGCTGATGAGGTTCCTGGAAACCCATCTTCTTTCTTTGTGCAGGAGCAGA AGCTTCTGAGCACCTTCTTTGCTGTGACATCTGCAGTGCACATATCAATTGCGGGGTCTGATCACATCAGGGTCACTTGGATAACCGACGACCAAACCGT CCCATCTGTGGTCGAATACGGGACCGAACCGGGGAAGTACATTGACGAGGTCTTTGGTGACCGGAGTTCATATCAGTTCTTAACCTATACTTCGAGTTCA ATTCACCATGTAAGAATCGGACCATTGGAGCCGAACACCACTTACTACTACAGATGTGGCGGTCACGGTCCTGAATTTTCGTTAAAGACTCCTCCCTCTA CTTTCCCACTCGAAATCGCCGTGGTTGGGGATTTGGGACAAACTGACTGGTCAAAGGCAACGCTGCAAGGACTTGGTAGAAAGGACTATGACGTCTTTTT TCTACCGGGGGATTTGTCCTACGCCAACGGCCGGCAGCCGATGTGGGATTCATTCGGCCGGCTGGTCGAGCCGTACGCCAGCCGACGGCCGTGGGAGGTA ACGGAAGGAAACAAAGAAAAGGGAAGCAAGGGATTTGGGGANNNNNNNNNCCGCTGCGCTGTGCGGAGTGTTGTGTTTCCTCCCGGCGGCGGGGGCGCGC CGCGCCCCCGCCGCCGGCCGTGGATGGTAACGGAAGGAAACCACGAAATGGAAGGCATGCTATTCGGGATAGACGACGTGTTCAAGTCCTACAATGCGCG GTGGGTGATGCCACATAAGCAAAGTGGGTCCACCTCAAACCTCTACTACTCCTTCGACGTGGTAGGAGCCCACGTCATAATGTTAGGTTCGTGTACAGAT TTCGAATTCGGGTCAGACCAGTACAAATGGCTGGTGGCCGATTTGGCACGGGTCGATCGGAGAACAACGCCGTGGTTGATCGTTTCGGTGCACATGCCGT GGTACAACACGAACCAGGCGCACCATGGTGATGGGGAGACCATGAGGGTGGCGATGGAAGAAGTGTTGTATAAGGCCAAAGTGGACATTGTCTTTGCTGG CCATGTTCATGCCTATGAAAGATTTACCAGGGTTTATGATAATAAGGCTAATCCAGATGGCCCGGTTTACATCACAATCGGAACAGGCGGATATCATGGA GGAATCGAATCGTCGTTTGAGAGCCCAGCTCCCGCATTGTCGATGTATCGGGACCCGAGTTTCGGACATGGAAGGTTGAAGATATTTAGCGAGAAGAGAG CACGGTGGACCTGGCATAGGAATGATGACCTGGACTCTGATGTAGCTGACGAGTTGTGGTTGACATGTTTGAGCGCATCTTGGAATGATGAATAA
AA sequence Show only first row Show all	>Lus10021378 pacid=23178252 polypeptide=Lus10021378 locus=Lus10021378.g ID=Lus10021378.BGIv1.0 annot-version=v1.0 MGRSLPELKLYQLLLLSIVFLVSQYAASNESDDEFSQHISHNAVFIPHCVSASEPQQVHISMVGKDHIKVTWITDDEQVNSTVEYGKEPGRYNSKANGEH TSYKFFSYTSGKIHHVKIGPLEPDTTYYYQCGGVGPEFSMKTPPSTYPIEFAIVGDLGQTEWTKSTLERLNSSNYDMFLLPGDLSYADGKQPLWDSFGRL VEPYASQRPWMVTEGNHEIESIPVLNPEGFLAYNARWPMPYKESGSSSNLYYSFEVAGCHIIMLGSYADFEAGSNQYKWLVADLACVDRKTTPWLIVLLH APWYNTNHAHQGDGEHMRRSMEDLLYNARVDIVFAGHVHAYERFTRIYNNRADPAGPVYITIGDGGNHEGLALTFKSPPSQLSLYREASFGHGRLRIVDG KRAHWSWHRNDDSSSEVADEVPGNPSSFFVQEQKLLSTFFAVTSAVHISIAGSDHIRVTWITDDQTVPSVVEYGTEPGKYIDEVFGDRSSYQFLTYTSSS IHHVRIGPLEPNTTYYYRCGGHGPEFSLKTPPSTFPLEIAVVGDLGQTDWSKATLQGLGRKDYDVFFLPGDLSYANGRQPMWDSFGRLVEPYASRRPWEV TEGNKEKGSKGFGXXXXRCAVRSVVFPPGGGGAPRPRRRPWMVTEGNHEMEGMLFGIDDVFKSYNARWVMPHKQSGSTSNLYYSFDVVGAHVIMLGSCTD FEFGSDQYKWLVADLARVDRRTTPWLIVSVHMPWYNTNQAHHGDGETMRVAMEEVLYKAKVDIVFAGHVHAYERFTRVYDNKANPDGPVYITIGTGGYHG GIESSFESPAPALSMYRDPSFGHGRLKIFSEKRARWTWHRNDDLDSDVADELWLTCLSASWNDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10021378 [exp]	0	1
AT2G41790			Insulinase (Peptidase family M...		Lus10018071 [exp]	2.8	0.8250
AT5G42470			unknown protein		Lus10034533 [exp]	13.3	0.7595
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	14.7	0.7911
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	14.7	0.7498
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	17.0	0.8023
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	17.1	0.7961
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	21.2	0.7954
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	21.9	0.7764
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10030376 [exp]	22.0	0.7946
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	22.4	0.7966

Compare expression of checked genes

Lus10021378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.