Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52820 98 / 9e-24 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 81 / 9e-18 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G20500 75 / 1e-15 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52780 55 / 7e-09 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT5G34850 55 / 1e-08 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT4G13700 53 / 4e-08 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT2G16430 49 / 5e-07 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 49 / 7e-07 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT2G18130 49 / 7e-07 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT3G46120 49 / 9e-07 ATPAP19, PAP19 purple acid phosphatase 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017059 [exp] 173 / 5e-52 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1) Lus10021378 [exp] 108 / 7e-27 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10021377 [exp] 80 / 4e-17 AT3G52820 603 / 0.0 purple acid phosphatase 22 (.1) Lus10019625 [exp] 79 / 4e-17 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10040079 [exp] 74 / 4e-15 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10017060 [exp] 61 / 1e-11 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017056 [exp] 62 / 5e-11 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021376 [exp] 54 / 3e-08 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10017057 [exp] 53 / 4e-08 AT3G52780 375 / 1e-129 Purple acid phosphatases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030700 [exp] 96 / 5e-23 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.011G138200 [exp] 79 / 4e-17 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 76 / 9e-16 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.002G029300 [exp] 51 / 2e-07 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G123700 [exp] 50 / 3e-07 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.006G063700 [exp] 50 / 3e-07 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.003G176000 [exp] 50 / 4e-07 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.017G055800 [exp] 50 / 5e-07 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055900 [exp] 50 / 5e-07 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.018G024800 [exp] 50 / 6e-07 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021379 pacid=23178287 polypeptide=Lus10021379 locus=Lus10021379.g ID=Lus10021379.BGIv1.0 annot-version=v1.0 ATGGAAAGCCCCTACGCATCAACCAACTTTGAACTGCATCCACTTTCTCCTGGAGTCCTCCTCTTCACTCCCCACACTCGATCTGCATCTGATCCTCAAC AGGTCCACATATCAACTGCTGGGAAAGATCACATGACAGTCACCTGGATAACTGACCACCAAACCGTCCATTCCACCGTTGAATATGGAACTCAACCGGG AAAGTACTCGGCTAAGGTTACTGGCAACCACCGGAGTTCGTTTCGGTTCTTAACCTATATCTCAGAGTCCATTCACCATGTGAAGATCGGACCTTTGAAT CAAGGGCATGGTGAAACCATGAGGGTGGCTATGGAAGAGATGTTGTATAAGGCCAAAGTTGACATTGTCTTCGCAGGACATGTTCATGCATATGAAAGAT TCGTAAGGTACAAAGTACATGGGGTTAGGAAACTTAAAGGTCCGGTTACCCAAAGAACGACCCGTAAGATCGCTCCACTGATCCCCAACATCCCCCCATA TCCTGTACCCTTCATCAGCAGCCTCCTCATCTCCGACTTGTACACCACCGCAGTCTGCCCCTTGTACGACGCCGTCCTCAGTTCGCTCATACCCCACGAA CCCCTGGCGATCCAGGTTAAGACGCGTGGCATCTCCAAGCCCTTCCTCGTCCCTTCCGCTAAATGA
AA sequence Show only first row Show all	>Lus10021379 pacid=23178287 polypeptide=Lus10021379 locus=Lus10021379.g ID=Lus10021379.BGIv1.0 annot-version=v1.0 MESPYASTNFELHPLSPGVLLFTPHTRSASDPQQVHISTAGKDHMTVTWITDHQTVHSTVEYGTQPGKYSAKVTGNHRSSFRFLTYISESIHHVKIGPLN QGHGETMRVAMEEMLYKAKVDIVFAGHVHAYERFVRYKVHGVRKLKGPVTQRTTRKIAPLIPNIPPYPVPFISSLLISDLYTTAVCPLYDAVLSSLIPHE PLAIQVKTRGISKPFLVPSAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10021379 [exp]	0	1

Compare expression of checked genes

Lus10021379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.