Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38600 51 / 1e-08 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 41 / 3e-05 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 40 / 6e-05 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 37 / 0.0007 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 37 / 0.0007 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 37 / 0.0008 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 37 / 0.001 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023731 [exp] 38 / 0.0005 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 38 / 0.0005 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139700 [exp] 56 / 1e-10 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 47 / 2e-07 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 45 / 2e-06 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 39 / 0.0002 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021380 pacid=23178270 polypeptide=Lus10021380 locus=Lus10021380.g ID=Lus10021380.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCGGCGGCAGGAGTACTACTGTTACGGCTCTTCTTCTTCGTCTTGATACTAACAGTAGGCCACGTGGCACAACAAGCGCCACCGGACAATC TCGGGGAGGGGGAGGAGGAAGAAGAAAAAAGAGGTGGCTGGCTGCCGTCGGTGGCCGGCGGCGGAACAATATCAGTTAACAACATCTACTGCCTGAGCTG GAGGCTAGGAGTGGAGACTAACAACGTCCGCGCGTGGAGGACAGTTCCTCCGCAGTGCTACGGTGGAGTGCCGCCGATGAGAGAGCGCCTGCACGTTTTG TTTAATACCGCACGAACGAACTAG
AA sequence Show only first row Show all	>Lus10021380 pacid=23178270 polypeptide=Lus10021380 locus=Lus10021380.g ID=Lus10021380.BGIv1.0 annot-version=v1.0 MAAAAAGVLLLRLFFFVLILTVGHVAQQAPPDNLGEGEEEEEKRGGWLPSVAGGGTISVNNIYCLSWRLGVETNNVRAWRTVPPQCYGGVPPMRERLHVL FNTARTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38600			HAD superfamily, subfamily III...		Lus10021380 [exp]	0	1
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	1.0	0.9818
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10011213 [exp]	1.4	0.9608
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	4.6	0.9544
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	6.7	0.9291
AT1G49000			unknown protein		Lus10032453 [exp]	8.5	0.9098
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	9.2	0.9324
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	10.7	0.9165
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10029081 [exp]	13.4	0.8145
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10023873 [exp]	15.4	0.9124
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	16.7	0.9098

Compare expression of checked genes

Lus10021380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.