Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035750 [exp] 40 / 0.0002 AT1G51640 177 / 4e-51 exocyst subunit exo70 family protein G2 (.1) Lus10025720 [exp] 39 / 0.0003 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021381 pacid=23178182 polypeptide=Lus10021381 locus=Lus10021381.g ID=Lus10021381.BGIv1.0 annot-version=v1.0 ATGGCAGCAACGTTGGGCACTCCACAAGCGGGTATGTTGGCGAAGACGCTAGGCAAATTGTTCATACAGCTGTGCTCGAGGCCATTCTATCTTGGACATG TGATTCTTCTTCGGATAATGCATCATTTTGTGACCTTGGTGGCCCATTCCCGTGCTGGCCACATCAGTTTGACATTCGGAGGCTCTATTGTTAGGGAGAT ATGCCAGCGGTTCTCGTCTCTGTTAGAGATTCATCTGCAGATTATTCGGCGGTTAAGTAATAGAGCCGTCCATTATATGGTATGCGAGAATGAAGTCTTG ACCAGTTTAGCCTTGCAGCGAGTTTGCCGCTCGCCGTTCTTGCCTGCTCACCGCTTTGTGACGTTGCTGTTTGGTGATTCACGGTTCCAGACAAAAGTGT ATGGCGTAGGAGCGTCAATGGACGATCATAATTTCTATTATTAA
AA sequence Show only first row Show all	>Lus10021381 pacid=23178182 polypeptide=Lus10021381 locus=Lus10021381.g ID=Lus10021381.BGIv1.0 annot-version=v1.0 MAATLGTPQAGMLAKTLGKLFIQLCSRPFYLGHVILLRIMHHFVTLVAHSRAGHISLTFGGSIVREICQRFSSLLEIHLQIIRRLSNRAVHYMVCENEVL TSLALQRVCRSPFLPAHRFVTLLFGDSRFQTKVYGVGASMDDHNFYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021381 [exp]	0	1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10020511 [exp]	1.4	0.9577
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	2.0	0.9574
					Lus10028673 [exp]	3.0	0.8798
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10021393 [exp]	3.2	0.8593
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10008041 [exp]	3.5	0.8376
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Lus10015608 [exp]	4.0	0.8618
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	4.0	0.8008
AT1G60830			RNA-binding (RRM/RBD/RNP motif...		Lus10011201 [exp]	5.2	0.7647
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10021638 [exp]	11.4	0.6940
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	12.1	0.8129

Compare expression of checked genes

Lus10021381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.