Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08670 221 / 5e-64 unknown protein AT3G51540 89 / 2e-18 unknown protein AT2G40070 77 / 1e-14 unknown protein AT3G09000 72 / 4e-13 proline-rich family protein (.1) AT1G27850 68 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025209 [exp] 548 / 0 AT3G08670 398 / 6e-131 unknown protein Lus10040188 [exp] 87 / 1e-17 AT2G40070 533 / 0.0 unknown protein Lus10004390 [exp] 79 / 8e-16 AT2G40070 321 / 5e-107 unknown protein Lus10030402 [exp] 66 / 7e-11 AT2G40070 561 / 0.0 unknown protein Lus10037838 [exp] 66 / 7e-11 AT2G40070 551 / 0.0 unknown protein Lus10006433 [exp] 60 / 5e-09 AT1G27850 501 / 1e-158 unknown protein Lus10011374 [exp] 57 / 4e-08 AT2G40070 151 / 8e-37 unknown protein Lus10024526 [exp] 54 / 2e-07 AT2G40070 66 / 2e-11 unknown protein Lus10027767 [exp] 51 / 2e-06 AT2G40070 288 / 5e-86 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139500 [exp] 289 / 3e-89 AT3G08670 245 / 2e-73 unknown protein Potri.006G110700 [exp] 272 / 8e-83 AT3G08670 251 / 1e-75 unknown protein Potri.008G066900 [exp] 90 / 2e-18 AT2G40070 321 / 1e-102 unknown protein Potri.010G190300 [exp] 86 / 2e-17 AT2G40070 368 / 6e-121 unknown protein Potri.016G114900 [exp] 77 / 1e-14 AT2G40070 352 / 7e-114 unknown protein Potri.010G056200 [exp] 58 / 2e-08 AT1G27850 240 / 1e-64 unknown protein Potri.010G177000 [exp] 55 / 1e-07 AT2G40070 82 / 9e-17 unknown protein Potri.008G178600 [exp] 53 / 8e-07 AT1G27850 567 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021382 pacid=23178290 polypeptide=Lus10021382 locus=Lus10021382.g ID=Lus10021382.BGIv1.0 annot-version=v1.0 ATGCTGTGCAGATCCCCAACGAATAGCTCTTCCGTGTTGCGTGGATCTCATCCTCCCCCTTCTTCGCCTGTGGATTTGGGAACTTCTTCCTCACTGGCAT TGCCCAAGTCAATCAAAATGAGTCGAAGCAACTTCAGAGATTCTCTCGGCGGCGGCGGCAGAACTCTACTCGCTGCATCTCACCATCTCCACCGCCGAGG GCACAGCTTGAATTCCCTATCCAAGGACTCCGATGAGAACTTGGACCTCTTCTCCAAGAACCGCCGCTCCCTCTCCCTCGCCCCTTCCGACGATTCCGCC GACGTTCCAGTCAAACTAGGGAGACTTTCACTTGGATCTGCGAAAGTTTTTCCCAGAGGCGGGATCGACGATCTACTCTCCTCGGCTGAAGGAGGCAAAA ACGATTATGACTGGCTTCTTACACCCCCTGGAACTCCTCTTTTCCCGTCAACTGAGGCGAATGAGTCGCAGCCGCCTTCAGTGGCTCCCAGGACCGGTGG TCTGGGCAGATCTATTTCTACTGCAAAGTCTTCAAGGCTTTCAGTTTCACAGTCAGAGAGCTATCATTCCTCAAGACCTGCTAGAAGTAGTTCAGTTACT CGTTCTTCTTCCTCTGCTTCACATTTCAATACATATTCATCGAATAGATCTCCTTCTTCTATGCTAAACACAAGCTCAGCTTCAGTCTCATCATATACAA GACCAGCCTCCCCTGTTACTCGTTCACCTTCCATAGGAAGACCTTCAACACCATTCTCAGGCCGTTCAACTGGATCAAGGCCATCAACTCCATCCAGAAC TCGTCCATCACCACCTGAAAAGAGTACTCGACCATCCCAAACCTCAAGGCCTTCAACGCCCAGTTCCAGGCCTCAAACTCCTGCAAGCATGAATCCACCA GCTGCTCGATCTCGTCCATCAACACCCACACGCCGAACTCCTTTGCCTTCTGTTTCTTCCTCGTCAACTTCAGCTGGACGTGCTGCTTCAAATGGGCGCA TTTCCGCACCATCATCCCGCCCTAGCTCTCCAAGTCCACGAGTCCGATCCACTCAGCAACCTGTTGTTCCTCCTGATTTTTCACTAGACACACCTCCAAA CCTTAGAACAACTTTGCCAGACAGACCTCTTTCTGCTGGGAGGTCCAGACCAAATGCAGCCATCAATGGGAAACCAACCCCAGACAGTGCTGGCTTTGGT AACGTGCCTCCGCGGAGGAATCCGTCTCCAATTGTAACAAGGGGAAGAGTCACAGAACCCCCTGGAAGGAGTCGGATCCATTCCAATGGTCATGGATCGG ATATATCCGAGTCCAGAAGAAGCATGCATGGATCGGATATACCCGAGTCCAGAAGAAGCATGCATGGATTGGATCCAGGAGCAAGGAGAGCTTTGAAGCC ATCCTCTACTGCTGCGGACAGCACAGGATTCGGAAGAACGATATCGAAGAAGTCCATTGACATGGCTGTCAGACATATGGACATAAGAAGTGGAGGAGGA GGTACTCGTCCACTGTCAGGAACAACACTCTTCCCTCAAAGCATCCGAGGTGGCTCCATGAAACCCCAAAGCCATAACCAGAGCCAGACAGTTCGTTCTT CTTCAAGTGCTTTAGACGTGAATGGTAACGGTCACCTTCACAATGGAGCGGCTGTGGAGAACAGCCATTATGCAGCGGCTGGAAGAAGTCATCATCAGGT GGGGAATGAAGGACGGCAGTTTGCGAGATTGGGCGAAGGTGACATATACGAGAGCTCGCGCTATGATGCCATGTTACTGAAAGAGGACGTTAAGAACATG AACTGGCTGCACAGTGTGGACGACGATAAGTTCGATCAAGCTTCAATCTTCGATCATGGATTTGAGCCTCTGCCTGAACCCTTTTCTCCGCTATAA
AA sequence Show only first row Show all	>Lus10021382 pacid=23178290 polypeptide=Lus10021382 locus=Lus10021382.g ID=Lus10021382.BGIv1.0 annot-version=v1.0 MLCRSPTNSSSVLRGSHPPPSSPVDLGTSSSLALPKSIKMSRSNFRDSLGGGGRTLLAASHHLHRRGHSLNSLSKDSDENLDLFSKNRRSLSLAPSDDSA DVPVKLGRLSLGSAKVFPRGGIDDLLSSAEGGKNDYDWLLTPPGTPLFPSTEANESQPPSVAPRTGGLGRSISTAKSSRLSVSQSESYHSSRPARSSSVT RSSSSASHFNTYSSNRSPSSMLNTSSASVSSYTRPASPVTRSPSIGRPSTPFSGRSTGSRPSTPSRTRPSPPEKSTRPSQTSRPSTPSSRPQTPASMNPP AARSRPSTPTRRTPLPSVSSSSTSAGRAASNGRISAPSSRPSSPSPRVRSTQQPVVPPDFSLDTPPNLRTTLPDRPLSAGRSRPNAAINGKPTPDSAGFG NVPPRRNPSPIVTRGRVTEPPGRSRIHSNGHGSDISESRRSMHGSDIPESRRSMHGLDPGARRALKPSSTAADSTGFGRTISKKSIDMAVRHMDIRSGGG GTRPLSGTTLFPQSIRGGSMKPQSHNQSQTVRSSSSALDVNGNGHLHNGAAVENSHYAAAGRSHHQVGNEGRQFARLGEGDIYESSRYDAMLLKEDVKNM NWLHSVDDDKFDQASIFDHGFEPLPEPFSPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08670			unknown protein		Lus10021382 [exp]	0	1
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10007370 [exp]	4.2	0.8821
AT3G08670			unknown protein		Lus10025209 [exp]	7.1	0.8803
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	7.7	0.8852
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10029867 [exp]	9.4	0.8558
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	11.0	0.8547
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	11.5	0.8838
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10011101 [exp]	12.7	0.8754
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	13.7	0.8379
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	14.6	0.8808
AT2G45060			Uncharacterised conserved prot...		Lus10028177 [exp]	19.9	0.8693

Compare expression of checked genes

Lus10021382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.