Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08680 407 / 6e-134 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58300 396 / 3e-129 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 360 / 2e-115 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 346 / 6e-110 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 342 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 311 / 3e-97 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 311 / 2e-96 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G48480 291 / 5e-89 RKL1 receptor-like kinase 1 (.1) AT3G17840 290 / 1e-88 RLK902 receptor-like kinase 902 (.1) AT5G41680 280 / 1e-88 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025210 [exp] 1066 / 0 AT3G08680 669 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 411 / 2e-135 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 411 / 3e-135 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 399 / 2e-130 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 396 / 3e-129 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029005 [exp] 354 / 2e-112 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 348 / 8e-111 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 337 / 3e-107 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 335 / 4e-106 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139200 [exp] 423 / 4e-140 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 416 / 2e-137 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 414 / 2e-136 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 409 / 7e-134 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 364 / 7e-117 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 345 / 5e-110 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 343 / 4e-109 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 334 / 2e-105 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 333 / 2e-105 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 330 / 4e-104 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021383 pacid=23178227 polypeptide=Lus10021383 locus=Lus10021383.g ID=Lus10021383.BGIv1.0 annot-version=v1.0 ATGGAGAAGAGTCACTTCACAGAAATATTCCTCATCTTCATCTCCCTTCTATCTTACCGTTCCCATGGTGACCTCAGTTCGGATCGAACAGCACTGCTCG ACTTCGCCACCTCGGTCCCCCACACTCGCAGGCTCAACTGGACGTCCAGCACCAACCCATGTACATCTTGGCTTGGGATCACTTGTCGAAAGATAGGCTC CGGTTCCCGTGTAGTAGCCATTCGCTTACCAGGTGTTGGCTTCTCTGGGCCTTTCCCTTCCAACACCATTTCGAATCTAGATGCACTCACCTCGCTCAGT CTCCATTCCAACCATTTCTTGGATGATCTCCCGCAGGATGTGCTCTCCCTTCCTTCCATTCGTCGAATTTATCTACAGAGGAACAACTTCTCCGGAACCA TTCCTTCGTCCTTCTCGCCTAACCTTGTAGCACTTGACTTGTCCTTCAATTCTCTTGCCGGAGCCATTCCTTCCACGCTGCAGAATGTGACACAGCTCAC TCGTTTGAGGCTCGAAGGGAATGCTCTTACCGGATCCATACCGCCTGCTCTCAATGTTGACGAGTTGAAACAGTTTAACGTGAGTTACAATCAACTGAAC GGTTCGATTCCATCGACCCTCAAGAGCTTTCCTGCTTCTGCCTTTGTTGGCAACAGTGAGCTCTGTGGATCGCCTTTACAAACTAAGTGTTCTAACAATC TCGCACCTTCGCCTTCTCCTTCCATTTCCCCTGCACCTTCTTTTTCCCCAGTTCGTCCTCCACCACCGGCCAGATCCAATCCTGCAGCAGTTCCTCGAAA TCGAGCCGGTGTCTCCAACTCCAAGAAGAAGAAACTCGGCAGTGGATCAGTCATTGCAATCGCAGTAAGCTCTGTGGGGGTTGCGTTTCTAGCCATGGCT GTGTTGGTATGCTGTCTGAAGAAGAAGAAGAAAAATCAGGATGAAGGGGGCGAAGAAGTTACTAATGTTGCGAAAGTTAGAGGTGAAAAACGGGAGATGA TGATGACGCAGCCAAATGAAGGATTCGGCAGTGGGGTGCAGGAGCCTGAGAAGAACAAGTTGGTGTTCATCAATGGATTTCCTCAAAGTTACAATCTTGA GGATCTGTTGAGAGCTTCTGCTGAAGTTCTTGGGAAGGGAAGCTACGGGACGAGCTACAAGGCAGTTTTGGAGGACGGGACGACTGTGGCTGTGAAGAGG TTGAAGGAACTTGTTGTTGGGAAGAGAGACTTCGAGCAGCAGATGGAGAGCGTTGGAAAGATGGGTCATCATCTGAACGTGGTTCCTCTACGTGCTTATT ACTATTCCAAGGATGAGAAGCTCCTGGTCTATGATTACCTGCAAGTGGGAAGCTTTTCTTCTCTGTTGCATCATGGAAACAGTGCTGTTGCAGACTGGGA AACTAGAGTAAGCATCTGCCTCGGAGCTGCAAGAGGAATTGCTCATATCCATTCCGGTGGGAGGCATGTCCACGGCAACATCAGATCTTCGAACGTGTTG CTGACGAACGGCCTGCAAGGATGCATCTCGGACTTTGGATTAGCCACGATGATGAGCTACCCGGTCGTCCCGTCGAGAAATGCAGGATATCGAGCTCCGG AGGTTGTCAGTACGAGGAAATGCAGTCAGGAGTCTGACATGTACAGCTTCGGAGTCCTGCTGCTGGAGATGCTGACGGGAAAAGAAGCGGCTGGAACAGT GACTGGAGCAGGAGAGGAGGCGGTTGATCTGCCTCGGTGGGTGCAATCAGTGTTGAGAGAGGAGTGGACTGCTGAGGTGTTCGACCTGGAGCTGATGAGC CATAAGAACATTGAAGAGGAAATGGTTCAGGTGCTGCAGATTGCTATGGCTTGCATTGCTAAGTCGCCGGAGATGAGACCTAAGATGGAGCAAGTGGTGC GGCTGATTGAGGAAGTCCGGCCGATAACATACTCAGCCACCCCTTCTCCTTCCCCGTCAGTTACCGTTTCCGCTTCCACTGTGGACAACTGA
AA sequence Show only first row Show all	>Lus10021383 pacid=23178227 polypeptide=Lus10021383 locus=Lus10021383.g ID=Lus10021383.BGIv1.0 annot-version=v1.0 MEKSHFTEIFLIFISLLSYRSHGDLSSDRTALLDFATSVPHTRRLNWTSSTNPCTSWLGITCRKIGSGSRVVAIRLPGVGFSGPFPSNTISNLDALTSLS LHSNHFLDDLPQDVLSLPSIRRIYLQRNNFSGTIPSSFSPNLVALDLSFNSLAGAIPSTLQNVTQLTRLRLEGNALTGSIPPALNVDELKQFNVSYNQLN GSIPSTLKSFPASAFVGNSELCGSPLQTKCSNNLAPSPSPSISPAPSFSPVRPPPPARSNPAAVPRNRAGVSNSKKKKLGSGSVIAIAVSSVGVAFLAMA VLVCCLKKKKKNQDEGGEEVTNVAKVRGEKREMMMTQPNEGFGSGVQEPEKNKLVFINGFPQSYNLEDLLRASAEVLGKGSYGTSYKAVLEDGTTVAVKR LKELVVGKRDFEQQMESVGKMGHHLNVVPLRAYYYSKDEKLLVYDYLQVGSFSSLLHHGNSAVADWETRVSICLGAARGIAHIHSGGRHVHGNIRSSNVL LTNGLQGCISDFGLATMMSYPVVPSRNAGYRAPEVVSTRKCSQESDMYSFGVLLLEMLTGKEAAGTVTGAGEEAVDLPRWVQSVLREEWTAEVFDLELMS HKNIEEEMVQVLQIAMACIAKSPEMRPKMEQVVRLIEEVRPITYSATPSPSPSVTVSASTVDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	0	1
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	2.0	0.9571
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	3.2	0.9475
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10013016 [exp]	3.6	0.8988
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	4.2	0.9398
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	6.3	0.9318
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	7.1	0.9237
AT2G21100			Disease resistance-responsive ...		Lus10025064 [exp]	8.8	0.9215
AT5G46060			Protein of unknown function, D...		Lus10000133 [exp]	9.1	0.8486
AT5G07130		LAC13	laccase 13 (.1)		Lus10042251 [exp]	9.5	0.8973
AT5G14230			unknown protein		Lus10036990 [exp]	10.2	0.9112

Compare expression of checked genes

Lus10021383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.