Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38580 187 / 3e-54 Mitochondrial ATP synthase D chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025211 [exp] 420 / 1e-146 AT2G38580 126 / 1e-32 Mitochondrial ATP synthase D chain-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139000 [exp] 291 / 7e-94 AT2G38580 241 / 8e-74 Mitochondrial ATP synthase D chain-related protein (.1) Potri.006G110400 [exp] 291 / 8e-94 AT2G38580 252 / 4e-78 Mitochondrial ATP synthase D chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021384 pacid=23178213 polypeptide=Lus10021384 locus=Lus10021384.g ID=Lus10021384.BGIv1.0 annot-version=v1.0 ATGGAGGACGAGAAGAAGAAGAAGCGAAACAAGAAAAAGAAGAACAAACAACAACAGAACAAGGCATCTGAAGACGATGCCTCCTCGGATCATACGATCA ATGGGGGAAATGCTCATCACACCGCTCTCCAAAATGGCGCGCCGAACATTGATGACGGCAATGCTAGTTCGAACGCCCACCGTGGCGACAATGGATTCCA CGAGTCCGTCTCAACTGCAGTCCAGAAGCAGCAGTTGTTGCAACTGCAAAGAGAGGGTGACATGATAGAGGAAATCAGCCGATTACTCAAGGAAAATGAA TCGCACATACAGAAAGAGGCGGACCTAGAGGAGAAGATCAAAGAGTTAAAAGATCGAAATGATTCACATGTACAGATGCAGGCTTCCCTAGAAGATGCAA TCAAAGCATTGATAAGTGCAAATGACATTTGTGTGGTTAAAGAGGCAGATTTTGAGGAGAAGATCAATCAATTCAAAATTGAAAAGAGCACATACATGCA AAAAGAGGCTGATCTAGAGATGAAGATTGCAGAATTACAGCGTGAAAAGGATTTAATGCTTGAAAGGGAGACTGCTTTGAAAGAAACAATTGGGAGACAA AATGTTGACATTACAAGATTAAGAATGCAGGTGGTGGAACTGGACGAAAATAAGAGTAGTCTTCTAAAAGAGAACCAAATTATGGCGGAAAGAATATCCG ATCTGCAGTCCAAAGTTCAGAGCCTTGAAACAAGCATTTCCTCTGCAAGCGTGATGGAACTTACTAAGAATCCTTCAGACAAGAATGGCGACTTGGACCT ACAGGTTGAAGCAGCTCATGCACTCGTCAACAAATTGATCATGGAAAACGCAGAGCTTGTCGAGAAGGTGAATGAGTTGTACGTCAAGCTTGACCAAAAG GACTGGGAACTTGACCGGTCTTCTGCCCCTGAAAGCGATGGCAGGATTGCAAGTTCCGAGATTGTTGACACCTCGACTTCACCCGCAGAGTCAGTCCACA ACATCCCTGGTTTGAGTAGTAAGTCAGAGTCCACAGAAGTGCTGGCGCCAACAGTAGCTCGAATTCCAATACCCTCAGAATCCGACTCGGCAGAGATCGT CCAAATCTCACTGGACGAAAGCGAAGTCAATGGGGATTCACAGACAGCAACTGCTGAGCTTGACAATGACGCAATACCACTTACAGATGCCCCACTCATT GGCGCTCCATTTAGACTAATCTCTTTCGTCGCTAGCTACGTTAGTGGTGCTGATTTAGTCAACAAGAGTTAA
AA sequence Show only first row Show all	>Lus10021384 pacid=23178213 polypeptide=Lus10021384 locus=Lus10021384.g ID=Lus10021384.BGIv1.0 annot-version=v1.0 MEDEKKKKRNKKKKNKQQQNKASEDDASSDHTINGGNAHHTALQNGAPNIDDGNASSNAHRGDNGFHESVSTAVQKQQLLQLQREGDMIEEISRLLKENE SHIQKEADLEEKIKELKDRNDSHVQMQASLEDAIKALISANDICVVKEADFEEKINQFKIEKSTYMQKEADLEMKIAELQREKDLMLERETALKETIGRQ NVDITRLRMQVVELDENKSSLLKENQIMAERISDLQSKVQSLETSISSASVMELTKNPSDKNGDLDLQVEAAHALVNKLIMENAELVEKVNELYVKLDQK DWELDRSSAPESDGRIASSEIVDTSTSPAESVHNIPGLSSKSESTEVLAPTVARIPIPSESDSAEIVQISLDESEVNGDSQTATAELDNDAIPLTDAPLI GAPFRLISFVASYVSGADLVNKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	0	1
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	2.0	0.8631
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	2.4	0.8536
AT5G58510			unknown protein		Lus10031857 [exp]	4.7	0.7904
AT2G38580			Mitochondrial ATP synthase D c...		Lus10025211 [exp]	5.7	0.8212
AT1G17820			Putative integral membrane pro...		Lus10040647 [exp]	8.5	0.8435
AT5G14500			aldose 1-epimerase family prot...		Lus10032084 [exp]	10.2	0.7977
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	11.1	0.8347
AT1G28240			Protein of unknown function (D...		Lus10011175 [exp]	12.1	0.8231
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	13.2	0.8268
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	14.8	0.8271

Compare expression of checked genes

Lus10021384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.